RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA781427" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 5 ✖

bioproject 1

  • PRJNA781427 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
760421 760421 PRJNA781427_P_NODE_33961_length_396_cov_0.953560_g33080_i0 PRJNA781427 33961 396 0.95356 3.7760976 Chlorella variabilis 554065 Plants Plants 228 5.869999999999998e-55   NTclustered gi|552840926|ref|XM_005850117.1| 554065 g33080 i0 79.341 68.8030303030303 334 61 83 8 67 396 81 410 Chlorella variabilis hypothetical protein (CHLNCDRAFT_56045) mRNA, complete cds blastn 27246 228 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
8413514 8413514 PRJNA781427_P_NODE_32947_length_402_cov_2.340426_g32066_i0 PRJNA781427 32947 402 2.340426 9.40851252 Chlamydomonas reinhardtii 3055 Plants Plants 54.7 0.011   NTclustered gi|2082243632|ref|XM_043061492.1| 3055 g32066 i0 100 0.0721393034825871 29 0 7 0 328 356 938 966 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_03g205800v5), mRNA blastn 29 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
10964261 10964261 PRJNA781427_P_NODE_22269_length_508_cov_3.708046_g21392_i0 PRJNA781427 22269 508 3.708046 18.83687368 Cylindrocapsa geminella 52679 Plants Plants 75 1.06e-8   NTclustered gi|6120012|gb|AF183472.1| 52679 g21392 i0 97.727 8.85236220472441 44 0 8 1 27 69 615 572 Cylindrocapsa geminella culture SAG:3.87 strain SAG 3.87 28S ribosomal RNA gene, partial sequence blastn 4497 75 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Cylindrocapsaceae Cylindrocapsa Cylindrocapsa geminella
10965333 10965333 PRJNA781427_P_NODE_62609_length_280_cov_1.487923_g61725_i0 PRJNA781427 62609 280 1.487923 4.1661844 Myrmecia israelensis 3171 Plants Plants 512 9.85e-141   NTclustered gi|723456786|ref|NC_025525.1| 3171 g61725 i0 99.643 113.210714285714 280 1 100 0 1 280 51354 51633 Myrmecia israelensis culture-collection UTEX:1181 chloroplast, complete genome blastn 31699 512 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia Myrmecia israelensis
13515543 13515543 PRJNA781427_P_NODE_83611_length_247_cov_0.885057_g82727_i0 PRJNA781427 83611 247 0.885057 2.18609079 Asteromonas gracilis 3156 Plants Plants 289 1.56e-73   NTclustered gi|66864256|gb|DQ015711.1| 3156 g82727 i0 87.903 8.34817813765182 248 27 99 3 2 247 1506 1752 Asteromonas gracilis strain CCMP 813 26S ribosomal RNA gene, partial sequence blastn 2062 289 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Asteromonadaceae Asteromonas Asteromonas gracilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;