RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA781427" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 6 ✖

bioproject 1

  • PRJNA781427 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5040282 5040282 PRJNA781427_P_NODE_68804_length_264_cov_1.565445_g67920_i0 PRJNA781427 68804 264 1.565445 4.1327748 Sphenomonas 2704095 Euglenozoa other_Eukaryota 329 9.95e-86   NTclustered gi|1803019518|gb|MT007904.1| 2704096 g67920 i0 92.275 80.625 233 17 88 1 1 233 1537 1306 Sphenomonas angusta isolate HMD3 small subunit ribosomal RNA gene, partial sequence blastn 21285 329 1 Eukaryota Discoba   Euglenozoa Euglenida Petalomonadida Sphenomonadidae Sphenomonas Sphenomonas angusta
9688677 9688677 PRJNA781427_P_NODE_25168_length_472_cov_2.007519_g24289_i0 PRJNA781427 25168 472 2.007519 9.47548968 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 60.2 2.74e-4   NTclustered gi|290998558|ref|XM_002681802.1| 5762 g24289 i0 100 0.0677966101694915 32 0 7 0 303 334 343 312 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_63086), partial mRNA blastn 32 60.2 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
14788834 14788834 PRJNA781427_P_NODE_27272_length_450_cov_1.225464_g26391_i0 PRJNA781427 27272 450 1.225464 5.514588 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 56.5 0.003   NTclustered gi|2119429858|ref|XM_044691307.1| 51637 g26391 i0 100 0.128888888888889 30 0 7 0 325 354 304 275 Naegleria lovaniensis uncharacterized protein (C9374_001944), partial mRNA blastn 58 56.5 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
14790545 14790545 PRJNA781427_P_NODE_9412_length_873_cov_5.251250_g8718_i0 PRJNA781427 9412 873 5.25125 45.8434125 Leishmania mexicana 5665 Euglenozoa other_Eukaryota 56.5 0.007   NTclustered gi|401429815|ref|XM_003879341.1| 929439 g8718 i0 96.97 0.0378006872852234 33 1 4 0 39 71 1250 1282 Leishmania mexicana MHOM/GT/2001/U1103 U5 snRNA-associated splicing factor partial mRNA blastn 33 56.5 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania mexicana
19887099 19887099 PRJNA781427_P_NODE_27396_length_449_cov_0.819149_g26515_i0 PRJNA781427 27396 449 0.819149 3.67797901 Petalomonas cantuscygni 56452 Euglenozoa other_Eukaryota 331 4.99e-86   NTclustered gi|227908931|gb|FJ807263.2| 56452 g26515 i0 80.353 1.00890868596882 453 75 99 13 4 449 770 325 Petalomonas cantuscygni strain AMOP1 elongation factor-like gene, partial cds blastn 453 331 1 Eukaryota Discoba   Euglenozoa Euglenida Petalomonadida Scytomonadidae Petalomonas Petalomonas cantuscygni
21614182 21614182 PRJNA781427_P_NODE_69877_length_261_cov_2.265957_g68993_i0 PRJNA781427 69877 261 2.2659570000000002 5.91414777 Leishmania 5658 Euglenozoa other_Eukaryota 196 1.04e-45   NTclustered gi|2794766848|ref|XM_067836393.1| 5663 g68993 i0 92.647 75.4406130268199 136 10 84 0 126 261 155 20 Leishmania enriettii uncharacterized protein (CUR178_04688), partial mRNA blastn 19690 196 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania enriettii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;