RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA781427" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA781427 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10965371 10965371 PRJNA781427_P_NODE_64209_length_276_cov_1.517241_g63325_i0 PRJNA781427 64209 276 1.517241 4.18758516 Dictyostelium discoideum 44689 Evosea other_Eukaryota 60.2 1.52e-4   NTclustered gi|66818254|ref|XM_637695.1| 352472 g63325 i0 92.683 1.38768115942029 41 3 15 0 217 257 1234 1194 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0277165) mRNA, complete cds blastn 383 60.2 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
21614153 21614153 PRJNA781427_P_NODE_66417_length_270_cov_1.954315_g65533_i0 PRJNA781427 66417 270 1.954315 5.2766505 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 206 1.7999999999999998e-48   NTclustered gi|423291986|gb|JQ519438.1| 1260108 g65533 i0 81.154 33.6925925925926 260 45 96 4 13 270 331 74 Lesquereusia modesta clone JG10.65_a2 actin gene, partial cds blastn 9097 206 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Lesquereusiidae Lesquereusia Lesquereusia modesta

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;