RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA781196" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA781196 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19886579 19886579 PRJNA781196_P_NODE_65856_length_243_cov_0.858824_g65479_i0 PRJNA781196 65856 243 0.858824 2.08694232 Treponema saccharophilum 165 Bacteria Bacteria 93.5 1.29e-14   NTclustered gi|2581918939|dbj|AP025288.1| 165 g65479 i0 89.189 5.73662551440329 74 8 30 0 19 92 373822 373749 Treponema saccharophilum JCM 32279 DNA, complete genome blastn 1394 93.5 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema saccharophilum
22888974 22888974 PRJNA781196_P_NODE_52598_length_251_cov_1.719101_g52221_i0 PRJNA781196 52598 251 1.719101 4.31494351 root 1 Root_unresolved Root_unresolved 54.7 0.006   NTclustered gi|2620055352|gb|CP117021.1| 159 g52221 i0 100 0.725099601593626 29 0 23 0 14 42 2342474 2342446 Brachyspira hyodysenteriae strain ZH1179 chromosome, complete genome blastn 182 54.7 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Brachyspirales Brachyspiraceae Brachyspira Brachyspira hyodysenteriae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;