RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA781196" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA781196 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
759138 759138 PRJNA781196_P_NODE_29561_length_322_cov_1.253012_g29184_i0 PRJNA781196 29561 322 1.253012 4.03469864 Bodo saltans 75058 Euglenozoa other_Eukaryota 568 2.4299999999999993e-157   NTclustered gi|77994631|gb|DQ207569.1| 75058 g29184 i0 98.447 100.217391304348 322 5 100 0 1 322 920 1241 Bodo saltans strain HFCC12 18S ribosomal RNA gene, partial sequence blastn 32270 568 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
8864266 8864266 PRJNA781196_P_NODE_16827_length_405_cov_2.114458_g16450_i0 PRJNA781196 16827 405 2.114458 8.5635549 Leptomonas 5683 Euglenozoa other_Eukaryota 329 1.5999999999999996e-85   NTclustered gi|1002432462|ref|XM_015809846.1| 157538 g16450 i0 82.278 102.264197530864 395 56 95 12 21 405 835 445 Leptomonas pyrrhocoris elongation factor 1-alpha mRNA blastn 41417 329 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leptomonas Leptomonas pyrrhocoris
10963780 10963780 PRJNA781196_P_NODE_6049_length_631_cov_1.543011_g5680_i0 PRJNA781196 6049 631 1.543011 9.73639941 Euglena hiemalis 392896 Euglenozoa other_Eukaryota 569 1.3999999999999997e-157   NTclustered gi|1109178390|gb|KU375784.1| 392896 g5680 i0 83.123 74.70206022187 634 97 99 10 1 629 754 1382 Euglena hiemalis plastid glutamate 1-semialdehyde 2,1-aminotransferase mRNA, partial cds; nuclear gene for plastid product blastn 47137 569 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena hiemalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;