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contig_metadata

29 rows where analysis = "blastn", bioproject = "PRJNA781196" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 29 ✖

bioproject 1

  • PRJNA781196 · 29 ✖

analysis 1

  • blastn · 29 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
758988 758988 PRJNA781196_P_NODE_18201_length_392_cov_1.661442_g17824_i0 PRJNA781196 18201 392 1.661442 6.51285264 Volvox carteri 3067 Plants Plants 307 7.25e-79   NTclustered gi|302838052|ref|XM_002950539.1| 3068 g17824 i0 84.112 66.4132653061225 321 48 82 3 73 392 86 404 Volvox carteri f. nagariensis component of cytosolic 80S ribosome and 60S large subunit (rpl10A), mRNA blastn 26034 307 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
759781 759781 PRJNA781196_P_NODE_9321_length_521_cov_1.912946_g8946_i0 PRJNA781196 9321 521 1.912946 9.96644866 Chlamydomonas reinhardtii 3055 Plants Plants 725 0   NTclustered gi|2082255880|ref|XM_001702589.2| 3055 g8946 i0 91.747 20.5854126679463 521 43 100 0 1 521 1057 537 Chlamydomonas reinhardtii ribosomal protein L3 (CHLRE_10g417700v5), mRNA blastn 10725 725 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
1211114 1211114 PRJNA781196_P_NODE_13441_length_446_cov_1.463807_g13064_i0 PRJNA781196 13441 446 1.463807 6.52857922 Chlamydomonas 3052 Plants Plants 510 5.93e-140   NTclustered gi|2082247947|ref|XM_001698013.2| 3055 g13064 i0 87.387 72.4887892376682 444 56 99 0 1 444 507 64 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_06g278222v5), mRNA blastn 32330 510 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
2035816 2035816 PRJNA781196_P_NODE_8222_length_550_cov_1.308176_g7847_i0 PRJNA781196 8222 550 1.308176 7.194968 Dunaliella salina 3046 Plants Plants 392 2.81e-104   NTclustered gi|2599103|gb|AF028833.1|AF028833 3046 g7847 i0 80.418 2.89272727272727 526 93 95 9 28 548 23 543 Dunaliella salina 60S ribosomal protein (DSRP1) mRNA, complete cds blastn 1591 392 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Dunaliellaceae Dunaliella Dunaliella salina
4587142 4587142 PRJNA781196_P_NODE_10964_length_487_cov_1.130435_g10588_i0 PRJNA781196 10964 487 1.130435 5.50521845 Chlamydomonas reinhardtii 3055 Plants Plants 455 3.1e-123   NTclustered gi|2082249449|ref|XM_001691166.2| 3055 g10588 i0 83.951 84.0574948665298 486 66 99 11 7 486 594 115 Chlamydomonas reinhardtii ribosomal protein S4 (CHLRE_06g308250v5), mRNA blastn 40936 455 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
4587479 4587479 PRJNA781196_P_NODE_32784_length_308_cov_1.651064_g32407_i0 PRJNA781196 32784 308 1.651064 5.08527712 Medakamo hakoo 3113649 Plants Plants 213 1.25e-50   NTclustered gi|2083529837|dbj|LC604817.1| 3113649 g32407 i0 80.212 28.5292207792208 283 56 92 0 16 298 5134 4852 Medakamo hakoo NIES-4000 mitochondrial DNA, complete genome blastn 8787 213 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Medakamo Medakamo hakoo
6315197 6315197 PRJNA781196_P_NODE_24245_length_349_cov_1.130435_g23868_i0 PRJNA781196 24245 349 1.130435 3.94521815 Chlorophyta 3041 Plants Plants 226 1.8299999999999995e-54   NTclustered gi|2082268155|ref|XM_001691849.2| 3055 g23868 i0 83.065 26.5444126074499 248 42 71 0 48 295 383 136 Chlamydomonas reinhardtii ribosomal protein S26 (CHLRE_16g682300v5), mRNA blastn 9264 226 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
7137566 7137566 PRJNA781196_P_NODE_15046_length_425_cov_1.107955_g14669_i0 PRJNA781196 15046 425 1.107955 4.70880875 Polytomella sp. Pringsheim 198.80 37502 Plants Plants 357 7.75e-94   NTclustered gi|635557418|emb|FN984964.1| 37502 g14669 i0 82.212 95.3905882352941 416 72 98 2 11 425 929 515 Polytomella sp. Pringsheim 198.80 mRNA for mitochondrial ADP/ATP translocator protein (ant1 gene) blastn 40541 357 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Polytomella Polytomella sp. Pringsheim 198.80
8412214 8412214 PRJNA781196_P_NODE_24147_length_349_cov_1.978261_g23770_i0 PRJNA781196 24147 349 1.978261 6.90413089 Chlamydomonas reinhardtii 3055 Plants Plants 292 1.7799999999999998e-74   NTclustered gi|2082246004|ref|XM_001700604.2| 3055 g23770 i0 82.029 30.7392550143266 345 60 99 2 1 344 464 121 Chlamydomonas reinhardtii ribosomal protein S15a (CHLRE_05g234637v5), mRNA blastn 10728 292 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
9687714 9687714 PRJNA781196_P_NODE_34288_length_302_cov_1.703057_g33911_i0 PRJNA781196 34288 302 1.703057 5.14323214 Chlamydomonas reinhardtii 3055 Plants Plants 379 1.14e-100   NTclustered gi|238534977|gb|GQ176397.1| 3055 g33911 i0 90.345 77.317880794702 290 26 96 2 5 293 273 561 Chlamydomonas reinhardtii clone CNC66 molecular marker mRNA sequence blastn 23350 379 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
10963006 10963006 PRJNA781196_P_NODE_11909_length_470_cov_1.571788_g11533_i0 PRJNA781196 11909 470 1.571788 7.3874036 Chlamydomonas reinhardtii 3055 Plants Plants 342 2.42e-89   NTclustered gi|2082255536|ref|XM_001696647.2| 3055 g11533 i0 81.573 4.19787234042553 445 54 89 17 1 419 559 117 Chlamydomonas reinhardtii ribosomal protein S10 (CHLRE_09g411100v5), mRNA blastn 1973 342 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
12238556 12238556 PRJNA781196_P_NODE_11070_length_485_cov_1.250000_g10694_i0 PRJNA781196 11070 485 1.25 6.0625 Chlamydomonas reinhardtii 3055 Plants Plants 398 5.269999999999998e-106   NTclustered gi|2082254272|ref|XM_001694376.2| 3055 g10694 i0 82.391 84.7340206185567 460 77 94 3 20 477 607 150 Chlamydomonas reinhardtii ribosomal protein L10 (CHLRE_09g388200v5), mRNA blastn 41096 398 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
13512939 13512939 PRJNA781196_P_NODE_26951_length_334_cov_2.252874_g26574_i0 PRJNA781196 26951 334 2.252874 7.52459916 Monoraphidium neglectum 145388 Plants Plants 228 4.8699999999999985e-55   NTclustered gi|926784915|ref|XM_014045478.1| 145388 g26574 i0 82.397 32.497005988024 267 41 79 4 4 267 1 264 Monoraphidium neglectum 60S ribosomal protein L27a-3 mRNA blastn 10854 228 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
14787873 14787873 PRJNA781196_P_NODE_35772_length_297_cov_1.044643_g35395_i0 PRJNA781196 35772 297 1.044643 3.10258971 Coccomyxa subellipsoidea 248742 Plants Plants 185 2.61e-42   NTclustered gi|545359983|ref|XM_005645351.1| 574566 g35395 i0 80.237 0.851851851851852 253 45 85 5 1 251 199 448 Coccomyxa subellipsoidea C-169 putative 40S ribosomal protein S3 partial mRNA blastn 253 185 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
14788213 14788213 PRJNA781196_P_NODE_58752_length_247_cov_0.896552_g58375_i0 PRJNA781196 58752 247 0.896552 2.21448344 Chlorosarcina stigmatica 327050 Plants Plants 429 8.83e-116   NTclustered gi|66864283|gb|DQ015738.1| 327050 g58375 i0 97.976 99.6194331983806 247 5 100 0 1 247 1797 1551 Chlorosarcina stigmatica strain UTEX 962 26S ribosomal RNA gene, partial sequence blastn 24606 429 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlorosarcinales Chlorosarcinaceae Chlorosarcina Chlorosarcina stigmatica
15239665 15239665 PRJNA781196_P_NODE_2692_length_903_cov_23.443373_g2399_i0 PRJNA781196 2692 903 23.443373 211.69365819 Eukaryota 2759 Plants Plants 627 1.1899999999999995e-174   NTclustered gi|969822364|gb|KT950949.1| 3130 g2399 i0 81.163 87.4307862679956 791 139 87 9 78 863 2 787 Bryopsis plumosa actin mRNA, partial cds blastn 78950 630 0.995238095238095 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis plumosa
16061984 16061984 PRJNA781196_P_NODE_50513_length_253_cov_0.866667_g50136_i0 PRJNA781196 50513 253 0.866667 2.19266751 Chlamydomonas reinhardtii 3055 Plants Plants 228 3.549999999999999e-55   NTclustered gi|2082243707|ref|XM_043061447.1| 3055 g50136 i0 87.065 1.58893280632411 201 26 79 0 52 252 1988 2188 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_03g204150v5), mRNA blastn 402 228 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
16062098 16062098 PRJNA781196_P_NODE_58073_length_248_cov_0.891429_g57696_i0 PRJNA781196 58073 248 0.891429 2.21074392 Volvox carteri 3067 Plants Plants 436 5.3e-118   NTclustered gi|6120030|gb|AF183490.1| 3068 g57696 i0 98.387 100.197580645161 248 4 100 0 1 248 1521 1768 Volvox carteri f. nagariensis strain UTEX 1885 (HK10) 28S ribosomal RNA gene, partial sequence blastn 24849 436 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
16062151 16062151 PRJNA781196_P_NODE_61393_length_245_cov_2.720930_g61016_i0 PRJNA781196 61393 245 2.72093 6.6662785 Coccomyxa subellipsoidea 248742 Plants Plants 294 3.33e-75   NTclustered gi|545371851|ref|XM_005650394.1| 574566 g61016 i0 88.797 96.5877551020408 241 25 98 2 3 242 927 1166 Coccomyxa subellipsoidea C-169 translation elongation factor mRNA blastn 23664 294 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
17338015 17338015 PRJNA781196_P_NODE_9134_length_526_cov_1.033113_g8759_i0 PRJNA781196 9134 526 1.033113 5.43417438 Monoraphidium neglectum 145388 Plants Plants 311 7.71e-80   NTclustered gi|926776617|ref|XM_014041329.1| 145388 g8759 i0 80.43 37.6692015209125 419 72 79 10 71 484 429 16 Monoraphidium neglectum 60S ribosomal protein L11 partial mRNA blastn 19814 311 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
18610549 18610549 PRJNA781196_P_NODE_13855_length_440_cov_2.776567_g13478_i0 PRJNA781196 13855 440 2.776567 12.2168948 Volvox carteri 3067 Plants Plants 239 3.04e-58   NTclustered gi|302829087|ref|XM_002946065.1| 3068 g13478 i0 80.186 18.6818181818182 323 60 73 4 114 434 42 362 Volvox carteri f. nagariensis component of cytosolic 80S ribosome and 60S large subunit (rpl21), mRNA blastn 8220 239 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
20337594 20337594 PRJNA781196_P_NODE_26756_length_335_cov_1.786260_g26379_i0 PRJNA781196 26756 335 1.78626 5.983971 Eukaryota 2759 Plants Plants 246 1.35e-60   NTclustered gi|302850155|ref|XM_002956560.1| 3068 g26379 i0 82.909 82.265671641791 275 46 82 1 1 274 1065 1339 Volvox carteri f. nagariensis kinesin-II motor protein (flaJ), partial mRNA blastn 27559 248 0.991935483870968 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
20337656 20337656 PRJNA781196_P_NODE_38736_length_287_cov_1.177570_g38359_i0 PRJNA781196 38736 287 1.17757 3.3796259 Eukaryota 2759 Plants Plants 520 6.049999999999999e-143   NTclustered gi|1898545223|gb|MT951391.1| 3078 g38359 i0 99.303 99.8780487804878 287 2 100 0 1 287 596 882 Auxenochlorella pyrenoidosa strain Ozcimen001 small subunit ribosomal RNA gene, partial sequence blastn 28665 525 0.990476190476191 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
21161550 21161550 PRJNA781196_P_NODE_13437_length_446_cov_1.530831_g13060_i0 PRJNA781196 13437 446 1.530831 6.82750626 Chlorella variabilis 554065 Plants Plants 348 4.92e-91   NTclustered gi|552812512|ref|XM_005843657.1| 554065 g13060 i0 81.71 91.2937219730942 421 73 94 4 2 420 199 617 Chlorella variabilis hypothetical protein (CHLNCDRAFT_49213) mRNA, complete cds blastn 40717 348 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
21162139 21162139 PRJNA781196_P_NODE_53797_length_251_cov_0.876404_g53420_i0 PRJNA781196 53797 251 0.876404 2.19977404 Chlamydomonas reinhardtii 3055 Plants Plants 252 2.09e-62   NTclustered gi|2082260409|ref|XM_001702296.2| 3055 g53420 i0 86.192 5.06772908366534 239 25 94 7 16 251 43 276 Chlamydomonas reinhardtii ribosomal protein S17 (CHLRE_12g498250v5), mRNA blastn 1272 252 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
22436448 22436448 PRJNA781196_P_NODE_2538_length_926_cov_1.273154_g2258_i0 PRJNA781196 2538 926 1.273154 11.78940604 Chlamydomonas reinhardtii 3055 Plants Plants 632 2.6299999999999995e-176   NTclustered gi|2082265357|ref|XM_001692764.2| 3055 g2258 i0 79.978 5.18034557235421 894 149 95 23 43 926 310 1183 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_14g625400v5), mRNA blastn 4797 632 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
23712489 23712489 PRJNA781196_P_NODE_61439_length_245_cov_1.813953_g61062_i0 PRJNA781196 61439 245 1.813953 4.44418485 Chlamydomonas reinhardtii 3055 Plants Plants 281 2.59e-71   NTclustered gi|2082260161|ref|XM_001690941.2| 3055 g61062 i0 89.954 87.7959183673469 219 20 89 2 28 245 130 347 Chlamydomonas reinhardtii ribosomal protein S23 (CHLRE_12g504200v5), mRNA blastn 21510 281 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
24985575 24985575 PRJNA781196_P_NODE_24420_length_348_cov_1.134545_g24043_i0 PRJNA781196 24420 348 1.134545 3.9482166 Monoraphidium neglectum 145388 Plants Plants 289 2.31e-73   NTclustered gi|926775445|ref|XM_014040743.1| 145388 g24043 i0 82.919 22.1206896551724 322 53 92 2 23 343 548 228 Monoraphidium neglectum 60S ribosomal protein L8 mRNA blastn 7698 289 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
24986247 24986247 PRJNA781196_P_NODE_67140_length_242_cov_0.923077_g66763_i0 PRJNA781196 67140 242 0.923077 2.23384634 Chlamydomonas reinhardtii 3055 Plants Plants 158 4.49e-34   NTclustered gi|2082237163|ref|XM_043058766.1| 3055 g66763 i0 84.024 1.75206611570248 169 21 70 3 74 242 127 289 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_01g039250v5), mRNA blastn 424 158 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;