contig_metadata
15 rows where analysis = "blastn", bioproject = "PRJNA781196" and tax_clade = "PVC group"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 759289 | 759289 | PRJNA781196_P_NODE_40261_length_282_cov_1.492823_g39884_i0 | PRJNA781196 | 40261 | 282 | 1.492823 | 4.20976086 | Prosthecobacter vanneervenii | 48466 | Bacteria | Bacteria | 514 | 2.76e-141 | NTclustered | gi|164510704|emb|AJ966883.1| | 48466 | g39884 | i0 | 99.644 | 259.617021276596 | 281 | 1 | 99 | 0 | 2 | 282 | 4722 | 4442 | Prosthecobacter vanneervenii 16S rRNA gene (partial), 23S rRNA gene, tRNA-Ala gene, tRNA-Ile gene, ITS1 and ITS2, strain DSM 12252 | blastn | 73212 | 514 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Prosthecobacter | Prosthecobacter vanneervenii | |
| 2035312 | 2035312 | PRJNA781196_P_NODE_38122_length_289_cov_1.083333_g37745_i0 | PRJNA781196 | 38122 | 289 | 1.083333 | 3.13083237 | Chthoniobacteraceae bacterium | 2811408 | Bacteria | Bacteria | 462 | 1.04e-125 | NTclustered | gi|2813917447|gb|CP170506.1| | 2811408 | g37745 | i0 | 95.517 | 142.826989619377 | 290 | 12 | 100 | 1 | 1 | 289 | 3046326 | 3046615 | MAG: Chthoniobacteraceae bacterium isolate SH-KS-3 chromosome, complete genome | blastn | 41277 | 462 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Spartobacteria | Chthoniobacterales | Chthoniobacteraceae | Chthoniobacteraceae bacterium | ||
| 2486731 | 2486731 | PRJNA781196_P_NODE_41422_length_278_cov_1.575610_g41045_i0 | PRJNA781196 | 41422 | 278 | 1.57561 | 4.3801958 | Planctomycetia | 203683 | Bacteria | Bacteria | 377 | 3.72e-100 | NTclustered | gi|12583967|gb|AF245371.1|AF245371 | 149588 | g41045 | i0 | 91.336 | 97.276978417266207 | 277 | 23 | 99 | 1 | 1 | 277 | 1454 | 1179 | Planctomycete str. 139 23S ribosomal RNA gene, partial sequence | blastn | 27043 | 377 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Planctomycetales | Planctomycetaceae | planctomycete str. 139 | ||
| 3310179 | 3310179 | PRJNA781196_P_NODE_15283_length_422_cov_1.315186_g14906_i0 | PRJNA781196 | 15283 | 422 | 1.315186 | 5.55008492 | Urbifossiella limnaea | 2528023 | Bacteria | Bacteria | 483 | 1.22e-131 | NTclustered | gi|1712585314|gb|CP036273.1| | 2528023 | g14906 | i0 | 88.557 | 167.5663507109 | 402 | 41 | 95 | 5 | 23 | 422 | 4212047 | 4212445 | Urbifossiella limnaea strain ETA_A1 chromosome, complete genome | blastn | 70713 | 483 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | Urbifossiella | Urbifossiella limnaea | |
| 4587379 | 4587379 | PRJNA781196_P_NODE_2564_length_921_cov_2.520047_g2282_i0 | PRJNA781196 | 2564 | 921 | 2.520047 | 23.20963287 | uncultured Planctomycetaceae bacterium | 100233 | Bacteria | Bacteria | 1212 | 0 | NTclustered | gi|2874254106|emb|OY970189.1| | 100233 | g2282 | i0 | 90.635 | 366.972855591748 | 929 | 63 | 99 | 15 | 1 | 912 | 5935886 | 5936807 | MAG: uncultured Planctomycetaceae bacterium isolate MFD09603.bin.2.127 genome assembly, chromosome: 1 | blastn | 337982 | 1212 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Planctomycetales | Planctomycetaceae | uncultured Planctomycetaceae bacterium | ||
| 4587880 | 4587880 | PRJNA781196_P_NODE_58104_length_248_cov_0.891429_g57727_i0 | PRJNA781196 | 58104 | 248 | 0.891429 | 2.21074392 | Chthoniobacter flavus | 191863 | Bacteria | Bacteria | 368 | 1.96e-97 | NTclustered | gi|183579828|emb|AM905425.1| | 497964 | g57727 | i0 | 95.279 | 270.915322580645 | 233 | 10 | 94 | 1 | 1 | 233 | 2418 | 2187 | Chthoniobacter flavus 23S rRNA gene, strain Ellin428 | blastn | 67187 | 368 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Spartobacteria | Chthoniobacterales | Chthoniobacteraceae | Chthoniobacter | Chthoniobacter flavus | |
| 8412048 | 8412048 | PRJNA781196_P_NODE_11527_length_477_cov_1.351485_g11151_i0 | PRJNA781196 | 11527 | 477 | 1.351485 | 6.44658345 | planctomycete str. 139 | 149588 | Bacteria | Bacteria | 664 | 0 | NTclustered | gi|12583967|gb|AF245371.1|AF245371 | 149588 | g11151 | i0 | 91.824 | 147.176100628931 | 477 | 36 | 99 | 3 | 3 | 477 | 10 | 485 | Planctomycete str. 139 23S ribosomal RNA gene, partial sequence | blastn | 70203 | 664 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Planctomycetales | Planctomycetaceae | planctomycete str. 139 | ||
| 9687630 | 9687630 | PRJNA781196_P_NODE_29408_length_323_cov_1.136000_g29031_i0 | PRJNA781196 | 29408 | 323 | 1.136 | 3.66928 | Urbifossiella limnaea | 2528023 | Bacteria | Bacteria | 403 | 7.27e-108 | NTclustered | gi|1712585314|gb|CP036273.1| | 2528023 | g29031 | i0 | 89.873 | 100.452012383901 | 316 | 28 | 98 | 4 | 4 | 317 | 2019862 | 2019549 | Urbifossiella limnaea strain ETA_A1 chromosome, complete genome | blastn | 32446 | 403 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | Urbifossiella | Urbifossiella limnaea | |
| 13513593 | 13513593 | PRJNA781196_P_NODE_6671_length_603_cov_3.562264_g6297_i0 | PRJNA781196 | 6671 | 603 | 3.562264 | 21.48045192 | Urbifossiella limnaea | 2528023 | Bacteria | Bacteria | 667 | 0 | NTclustered | gi|1712585314|gb|CP036273.1| | 2528023 | g6297 | i0 | 86.601 | 192.860696517413 | 612 | 72 | 100 | 4 | 1 | 603 | 2018886 | 2018276 | Urbifossiella limnaea strain ETA_A1 chromosome, complete genome | blastn | 116295 | 667 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | Urbifossiella | Urbifossiella limnaea | |
| 18611049 | 18611049 | PRJNA781196_P_NODE_48235_length_257_cov_1.695652_g47858_i0 | PRJNA781196 | 48235 | 257 | 1.695652 | 4.35782564 | Planctomycetales bacterium ZRK34 | 2723666 | Bacteria | Bacteria | 126 | 1.36e-24 | NTclustered | gi|1898316769|gb|CP050848.1| | 2723666 | g47858 | i0 | 92.135 | 2.91828793774319 | 89 | 7 | 35 | 0 | 6 | 94 | 3919915 | 3919827 | Planctomycetales bacterium ZRK34 chromosome, complete genome | blastn | 750 | 126 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Planctomycetales | Planctomycetales bacterium ZRK34 | |||
| 19062925 | 19062925 | PRJNA781196_P_NODE_28135_length_329_cov_1.046875_g27758_i0 | PRJNA781196 | 28135 | 329 | 1.046875 | 3.44421875 | Gemmataceae | 1914233 | Bacteria | Bacteria | 303 | 7.74e-78 | NTclustered | gi|1712585314|gb|CP036273.1| | 2528023 | g27758 | i0 | 83.582 | 119.334346504559 | 335 | 43 | 100 | 10 | 1 | 329 | 2017989 | 2017661 | Urbifossiella limnaea strain ETA_A1 chromosome, complete genome | blastn | 39261 | 303 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | Urbifossiella | Urbifossiella limnaea | |
| 19886487 | 19886487 | PRJNA781196_P_NODE_59996_length_246_cov_1.676301_g59619_i0 | PRJNA781196 | 59996 | 246 | 1.676301 | 4.12370046 | Prosthecobacter vanneervenii | 48466 | Bacteria | Bacteria | 438 | 1.4599999999999996e-118 | NTclustered | gi|12583975|gb|AF245379.1|AF245379 | 48466 | g59619 | i0 | 98.78 | 98.7845528455285 | 246 | 3 | 100 | 0 | 1 | 246 | 869 | 624 | Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence | blastn | 24301 | 438 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Prosthecobacter | Prosthecobacter vanneervenii | |
| 22437074 | 22437074 | PRJNA781196_P_NODE_66998_length_242_cov_0.923077_g66621_i0 | PRJNA781196 | 66998 | 242 | 0.923077 | 2.23384634 | Tautonia plasticadhaerens | 2527974 | Bacteria | Bacteria | 442 | 1.1099999999999995e-119 | NTclustered | gi|1712713678|gb|CP036426.1| | 2527974 | g66621 | i0 | 99.587 | 47.3140495867769 | 242 | 1 | 100 | 0 | 1 | 242 | 265463 | 265704 | Tautonia plasticadhaerens strain ElP chromosome | blastn | 11450 | 442 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Isosphaerales | Isosphaeraceae | Tautonia | Tautonia plasticadhaerens | |
| 24985968 | 24985968 | PRJNA781196_P_NODE_4960_length_690_cov_2.439222_g4599_i0 | PRJNA781196 | 4960 | 690 | 2.439222 | 16.8306318 | Isosphaeraceae bacterium EP7 | 3139350 | Bacteria | Bacteria | 804 | 0 | NTclustered | gi|2719878338|gb|CP151667.1| | 3139350 | g4599 | i0 | 87.767 | 116.408695652174 | 703 | 67 | 100 | 14 | 1 | 690 | 1599860 | 1599164 | Isosphaeraceae bacterium EP7 chromosome, complete genome | blastn | 80322 | 804 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Isosphaerales | Isosphaeraceae | Isosphaeraceae bacterium EP7 | ||
| 24986064 | 24986064 | PRJNA781196_P_NODE_5560_length_655_cov_1.625430_g5194_i0 | PRJNA781196 | 5560 | 655 | 1.62543 | 10.6465665 | planctomycete str. 139 | 149588 | Bacteria | Bacteria | 835 | 0 | NTclustered | gi|12583967|gb|AF245371.1|AF245371 | 149588 | g5194 | i0 | 89.802 | 157.317557251908 | 657 | 59 | 99 | 7 | 2 | 655 | 2850 | 2199 | Planctomycete str. 139 23S ribosomal RNA gene, partial sequence | blastn | 103043 | 835 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Planctomycetales | Planctomycetaceae | planctomycete str. 139 |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;