RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA781196" and tax_clade = "Haptista"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 3 ✖

bioproject 1

  • PRJNA781196 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7137644 7137644 PRJNA781196_P_NODE_19686_length_380_cov_1.159609_g19309_i0 PRJNA781196 19686 380 1.159609 4.4065142 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 267 1.1899999999999998e-66   NTclustered gi|551623074|ref|XM_005791779.1| 280463 g19309 i0 82.886 48.7921052631579 298 49 78 2 2 298 1189 1485 Emiliania huxleyi CCMP1516 hypothetical protein mRNA blastn 18541 267 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
16061919 16061919 PRJNA781196_P_NODE_46533_length_262_cov_2.063492_g46156_i0 PRJNA781196 46533 262 2.063492 5.40634904 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 204 6.239999999999999e-48   NTclustered gi|551577383|ref|XM_005774261.1| 280463 g46156 i0 83.71 14.2519083969466 221 31 84 3 1 220 620 404 Emiliania huxleyi CCMP1516 enolase (ENO1), mRNA blastn 3734 204 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
21162254 21162254 PRJNA781196_P_NODE_60597_length_246_cov_0.901734_g60220_i0 PRJNA781196 60597 246 0.901734 2.21826564 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 252 2.04e-62   NTclustered gi|551584984|ref|XM_005777752.1| 280463 g60220 i0 87.85 85.5487804878049 214 26 87 0 1 214 450 237 Emiliania huxleyi CCMP1516 hypothetical protein mRNA blastn 21045 252 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;