RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA774958" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA774958 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
752593 752593 PRJNA774958_P_NODE_20181_length_355_cov_1.500000_g19934_i0 PRJNA774958 20181 355 1.5 5.325 Caenorhabditis brenneri 135651 Nematoda Nematoda 65.8 4.31e-6   NTclustered gi|209489254|gb|FJ362359.1| 135651 g19934 i0 90 1.91549295774648 50 5 14 0 40 89 29820 29771 Caenorhabditis brenneri contig JD07, partial sequence blastn 680 65.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis brenneri
16055191 16055191 PRJNA774958_P_NODE_26033_length_301_cov_51.820175_g25786_i0 PRJNA774958 26033 301 51.820175 155.97872675 Strongyloides ratti 34506 Nematoda Nematoda 302 2.5200000000000006e-77   NTclustered gi|1376147859|ref|XM_024654603.1| 34506 g25786 i0 84.718 181.614617940199 301 46 100 0 1 301 989 1289 Strongyloides ratti Polyubiquitin-C (SRAE_2000341300), partial mRNA blastn 54666 302 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
22429769 22429769 PRJNA774958_P_NODE_10878_length_494_cov_1.736342_g10632_i0 PRJNA774958 10878 494 1.736342 8.57752948 Brugia malayi 6279 Nematoda Nematoda 58.4 0.001   NTclustered gi|2082283750|ref|XM_001896543.2| 6279 g10632 i0 100 0.062753036437247 31 0 6 0 336 366 193 163 Brugia malayi Phosducin family protein (Bma-mau-8), partial mRNA blastn 31 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
23705745 23705745 PRJNA774958_P_NODE_5079_length_724_cov_5.261137_g4864_i0 PRJNA774958 5079 724 5.261137 38.09063188 Strongyloides ratti 34506 Nematoda Nematoda 499 2.15e-136   NTclustered gi|1376146183|ref|XM_024653652.1| 34506 g4864 i0 80.841 87.5593922651934 642 118 88 5 1 639 923 1562 Strongyloides ratti ATP synthase subunit beta (SRAE_2000256800), partial mRNA blastn 63393 499 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
24979245 24979245 PRJNA774958_P_NODE_2660_length_970_cov_3.633222_g2496_i0 PRJNA774958 2660 970 3.633222 35.2422534 Strongyloides ratti 34506 Nematoda Nematoda 577 1.3099999999999995e-159   NTclustered gi|1376147403|ref|XM_024654346.1| 34506 g2496 i0 77.998 50.3092783505155 959 184 97 22 27 970 235 1181 Strongyloides ratti Proteasome (Prosome, macropain) 26S subunit, ATPase, 5 (SRAE_2000318400), partial mRNA blastn 48800 577 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;