RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA774958" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA774958 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
752663 752663 PRJNA774958_P_NODE_25421_length_306_cov_1.652361_g25174_i0 PRJNA774958 25421 306 1.652361 5.05622466 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 483 8.539999999999998e-132   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g25174 i0 95.098 33.7058823529412 306 15 100 0 1 306 633 328 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 10314 483 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
6312240 6312240 PRJNA774958_P_NODE_27925_length_287_cov_1.313084_g27678_i0 PRJNA774958 27925 287 1.313084 3.76855108 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 250 8.77e-62   NTclustered gi|161734|gb|L01415.1|TETBTUBUA 5911 g27678 i0 85.957 75.7665505226481 235 31 82 2 3 236 366 133 Tetrahymena thermophila beta-tubulin (BTU1) gene, complete cds blastn 21745 250 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;