RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA774958" and tax_phylum = "Apicomplexa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA774958 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2028687 2028687 PRJNA774958_P_NODE_38142_length_242_cov_1.366864_g37895_i0 PRJNA774958 38142 242 1.366864 3.30781088 Plasmodium gallinaceum 5849 SAR_Eukaryotes SAR_Eukaryotes 104 5.93e-18   NTclustered gi|1620124121|ref|XM_028672880.1| 5849 g37895 i0 89.157 0.958677685950413 83 9 49 0 38 120 934 1016 Plasmodium gallinaceum GTPase activator, putative (PGAL8A_00416500), partial mRNA blastn 232 104 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gallinaceum
5856109 5856109 PRJNA774958_P_NODE_18385_length_376_cov_0.983498_g18138_i0 PRJNA774958 18385 376 0.983498 3.69795248 Plasmodium gonderi 77519 SAR_Eukaryotes SAR_Eukaryotes 65.8 4.6e-6   NTclustered gi|1620947424|ref|XM_028685778.1| 77519 g18138 i0 81.395 0.356382978723404 86 10 22 3 250 332 6232 6150 Plasmodium gonderi hypothetical protein (PGO_011380), partial mRNA blastn 134 65.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gonderi
9681266 9681266 PRJNA774958_P_NODE_38848_length_241_cov_0.916667_g38601_i0 PRJNA774958 38848 241 0.916667 2.20916747 Plasmodium reichenowi 5854 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.006   NTclustered gi|1145259888|ref|XM_012907838.2| 5854 g38601 i0 92.5 0.804979253112033 40 0 17 2 94 133 9884 9920 Plasmodium reichenowi hypothetical protein partial mRNA blastn 194 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium reichenowi
14781278 14781278 PRJNA774958_P_NODE_22912_length_328_cov_1.207843_g22665_i0 PRJNA774958 22912 328 1.207843 3.96172504 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.002   NTclustered gi|401404821|ref|XM_003881812.1| 572307 g22665 i0 97.059 0.207317073170732 34 0 10 1 76 109 6138 6106 Neospora caninum Liverpool conserved hypothetical protein (NCLIV_016200), partial mRNA blastn 68 56.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;