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contig_metadata

21 rows where analysis = "blastn", bioproject = "PRJNA774958" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 21 ✖

tax_kingdom 1

bioproject 1

  • PRJNA774958 · 21 ✖

analysis 1

  • blastn · 21 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1208129 1208129 PRJNA774958_P_NODE_21061_length_346_cov_1.062271_g20814_i0 PRJNA774958 21061 346 1.062271 3.67545766 Streptomyces 1883 Bacteria Bacteria 56.5 0.003   NTclustered gi|2654765215|gb|CP108591.1| 2903763 g20814 i0 90.698 0.248554913294798 43 2 12 2 211 253 1671304 1671264 Streptomyces sp. NBC_01180 chromosome, complete genome blastn 86 56.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NBC_01180
4580927 4580927 PRJNA774958_P_NODE_39084_length_241_cov_0.916667_g38837_i0 PRJNA774958 39084 241 0.916667 2.20916747 Agromyces soli 659012 Bacteria Bacteria 446 8.519999999999999e-121   NTclustered gi|2216365065|gb|CP094533.1| 659012 g38837 i0 100 95.9170124481328 241 0 100 0 1 241 1792888 1793128 Agromyces soli strain KACC 16215 chromosome, complete genome blastn 23116 446 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agromyces Agromyces soli
5856294 5856294 PRJNA774958_P_NODE_34045_length_250_cov_0.870056_g33798_i0 PRJNA774958 34045 250 0.870056 2.17514 Bifidobacterium pseudocatenulatum 28026 Bacteria Bacteria 440 4.1399999999999976e-119   NTclustered gi|2119983138|gb|CP079231.1| 28026 g33798 i0 98.4 19.336 250 4 100 0 1 250 2130704 2130953 Bifidobacterium pseudocatenulatum strain YIT12820 chromosome, complete genome blastn 4834 440 1 Bacteria   Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium pseudocatenulatum
6312261 6312261 PRJNA774958_P_NODE_31245_length_264_cov_1.382199_g30998_i0 PRJNA774958 31245 264 1.382199 3.64900536 root 1 Root_unresolved Root_unresolved 54.7 0.007   NTclustered gi|2655888157|gb|CP109280.1| 1952 g30998 i0 100 1.625 29 0 11 0 25 53 3895067 3895039 Streptomyces thermoviolaceus strain NBC 01629 chromosome, complete genome blastn 429 54.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces thermoviolaceus
6312299 6312299 PRJNA774958_P_NODE_36465_length_245_cov_1.593023_g36218_i0 PRJNA774958 36465 245 1.593023 3.90290635 Cutibacterium 1912216 Bacteria Bacteria 453 5.1900000000000006e-123   NTclustered gi|966542502|gb|CP012354.1| 1747 g36218 i0 100 52.9755102040816 245 0 100 0 1 245 898862 899106 Cutibacterium acnes strain PA_12_1_L1 chromosome, complete genome blastn 12979 453 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
7586223 7586223 PRJNA774958_P_NODE_23466_length_323_cov_1.120000_g23219_i0 PRJNA774958 23466 323 1.12 3.6176 Actinomycetes 1760 Bacteria Bacteria 52.8 0.03   NTclustered gi|2689328232|dbj|AP029603.1| 212365 g23219 i0 100 0.173374613003096 28 0 9 0 256 283 217687 217660 Bifidobacterium porcinum JCM7042 DNA, complete genome blastn 56 52.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium porcinum
10956690 10956690 PRJNA774958_P_NODE_21149_length_345_cov_1.132353_g20902_i0 PRJNA774958 21149 345 1.132353 3.90661785 Rhodococcus sp. YL-1 1045808 Bacteria Bacteria 316 1.05e-81   NTclustered gi|1130060859|gb|CP017299.1| 1045808 g20902 i0 91.213 1.17101449275362 239 11 66 6 1 229 3829099 3829337 Rhodococcus sp. YL-1, complete genome blastn 404 316 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. YL-1
12232217 12232217 PRJNA774958_P_NODE_16050_length_405_cov_1.301205_g15803_i0 PRJNA774958 16050 405 1.301205 5.26988025 Micrococcus lylae 1273 Bacteria Bacteria 732 0   NTclustered gi|2514694063|gb|CP126965.1| 1273 g15803 i0 99.261 274.82962962963 406 2 100 1 1 405 1116621 1117026 Micrococcus lylae strain UMB0955 chromosome, complete genome blastn 111306 732 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus lylae
12687872 12687872 PRJNA774958_P_NODE_38290_length_242_cov_0.911243_g38043_i0 PRJNA774958 38290 242 0.911243 2.20520806 Rhodococcus 1827 Bacteria Bacteria 448 2.3799999999999995e-121   NTclustered gi|2190692273|gb|CP091858.1| 1833 g38043 i0 100 26.8471074380165 242 0 100 0 1 242 17719 17478 Rhodococcus erythropolis strain CERE8 plasmid unnamed4, complete sequence blastn 6497 448 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus erythropolis
13506509 13506509 PRJNA774958_P_NODE_38451_length_242_cov_0.911243_g38204_i0 PRJNA774958 38451 242 0.911243 2.20520806 Streptomyces netropsis 55404 Bacteria Bacteria 52.8 0.022   NTclustered gi|2700875784|gb|CP147867.1| 55404 g38204 i0 100 0.115702479338843 28 0 12 0 209 236 348474 348447 Streptomyces netropsis strain M-141 chromosome, complete genome blastn 28 52.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces netropsis
13962194 13962194 PRJNA774958_P_NODE_36351_length_246_cov_0.890173_g36104_i0 PRJNA774958 36351 246 0.890173 2.18982558 Rhodococcoides 3259750 Bacteria Bacteria 455 1.4500000000000002e-123   NTclustered gi|2637134465|gb|CP140264.1| 1828 g36104 i0 100 339.475609756098 246 0 100 0 1 246 1621521 1621276 Rhodococcoides fascians strain GS01 chromosome, complete genome blastn 83511 455 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcoides Rhodococcoides fascians
14781436 14781436 PRJNA774958_P_NODE_36032_length_246_cov_0.890173_g35785_i0 PRJNA774958 36032 246 0.890173 2.18982558 Streptomyces sp. cg36 3238798 Bacteria Bacteria 52.8 0.022   NTclustered gi|2784064359|gb|CP163520.1| 3238798 g35785 i0 100 0.113821138211382 28 0 11 0 105 132 995425 995398 Streptomyces sp. cg36 chromosome, complete genome blastn 28 52.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. cg36
17330987 17330987 PRJNA774958_P_NODE_33514_length_251_cov_0.865169_g33267_i0 PRJNA774958 33514 251 0.865169 2.17157419 Rhodococcoides fascians 1828 Bacteria Bacteria 464 2.47e-126   NTclustered gi|2637134465|gb|CP140264.1| 1828 g33267 i0 100 1 251 0 100 0 1 251 5154428 5154678 Rhodococcoides fascians strain GS01 chromosome, complete genome blastn 251 464 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcoides Rhodococcoides fascians
17785903 17785903 PRJNA774958_P_NODE_37834_length_243_cov_0.905882_g37587_i0 PRJNA774958 37834 243 0.905882 2.20129326 Corynebacterium 1716 Bacteria Bacteria 449 6.65e-122   NTclustered gi|2869797333|gb|CP175765.1| 38304 g37587 i0 100 366.008230452675 243 0 100 0 1 243 2385 2627 Corynebacterium tuberculostearicum strain YSMAA5_1_F11 chromosome, complete genome blastn 88940 449 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium tuberculostearicum
18604523 18604523 PRJNA774958_P_NODE_37015_length_244_cov_1.403509_g36768_i0 PRJNA774958 37015 244 1.403509 3.42456196 Agromyces soli 659012 Bacteria Bacteria 351 1.9399999999999998e-92   NTclustered gi|2216365065|gb|CP094533.1| 659012 g36768 i0 92.623 2.13114754098361 244 18 100 0 1 244 737256 737499 Agromyces soli strain KACC 16215 chromosome, complete genome blastn 520 351 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agromyces Agromyces soli
19059905 19059905 PRJNA774958_P_NODE_24535_length_314_cov_1.120332_g24288_i0 PRJNA774958 24535 314 1.120332 3.51784248 Nocardiaceae 85025 Bacteria Bacteria 568 2.3599999999999998e-157   NTclustered gi|2637134465|gb|CP140264.1| 1828 g24288 i0 99.361 406.770700636943 313 2 99 0 1 313 1622027 1622339 Rhodococcoides fascians strain GS01 chromosome, complete genome blastn 127726 568 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcoides Rhodococcoides fascians
19059910 19059910 PRJNA774958_P_NODE_24755_length_312_cov_1.414226_g24508_i0 PRJNA774958 24755 312 1.414226 4.41238512 Nocardiaceae 85025 Bacteria Bacteria 571 1.81e-158   NTclustered gi|2637134465|gb|CP140264.1| 1828 g24508 i0 99.679 383.11858974359 312 1 100 0 1 312 1623506 1623817 Rhodococcoides fascians strain GS01 chromosome, complete genome blastn 119533 571 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcoides Rhodococcoides fascians
20334632 20334632 PRJNA774958_P_NODE_30216_length_271_cov_1.469697_g29969_i0 PRJNA774958 30216 271 1.469697 3.98287887 Rhodococcus 1827 Bacteria Bacteria 501 2.05e-137   NTclustered gi|2660106423|gb|CP138905.1| 1831 g29969 i0 100 49 271 0 100 0 1 271 68832 69102 MAG: Rhodococcus sp. (in: high G+C Gram-positive bacteria) isolate 1088c chromosome blastn 13279 501 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. (in: high G+C Gram-positive bacteria)
21155194 21155194 PRJNA774958_P_NODE_22617_length_331_cov_1.139535_g22370_i0 PRJNA774958 22617 331 1.139535 3.77186085 Schaalia radingae 131110 Bacteria Bacteria 58.4 6.7e-4   NTclustered gi|1086031159|emb|LT629792.1| 131110 g22370 i0 89.13 0.308157099697885 46 5 14 0 257 302 973393 973348 Actinomyces radingae strain DSM 9169 genome assembly, chromosome: I blastn 102 58.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Schaalia Schaalia radingae
22429770 22429770 PRJNA774958_P_NODE_10938_length_493_cov_1.459524_g10692_i0 PRJNA774958 10938 493 1.459524 7.19545332 Mycobacteroides immunogenum 83262 Bacteria Bacteria 54.7 0.013   NTclustered gi|1041024973|gb|CP016189.1| 83262 g10692 i0 100 0.117647058823529 29 0 6 0 192 220 373880 373908 Mycobacteroides immunogenum strain FLAC016 chromosome, complete genome blastn 58 54.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides immunogenum
23705599 23705599 PRJNA774958_P_NODE_27919_length_287_cov_1.378505_g27672_i0 PRJNA774958 27919 287 1.378505 3.95630935 Streptomyces sp. SM1P 3123042 Bacteria Bacteria 52.8 0.027   NTclustered gi|2705505245|gb|CP149585.1| 3123042 g27672 i0 100 0.0975609756097561 28 0 10 0 114 141 2270597 2270624 Streptomyces sp. SM1P chromosome, complete genome blastn 28 52.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. SM1P

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;