RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA774958" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA774958 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20334677 20334677 PRJNA774958_P_NODE_36176_length_246_cov_0.890173_g35929_i0 PRJNA774958 36176 246 0.890173 2.18982558 Akkermansia 239934 Bacteria Bacteria 455 1.4500000000000002e-123   NTclustered gi|2051350654|gb|CP072036.1| 2927224 g35929 i0 100 100 246 0 100 0 1 246 1971456 1971211 Akkermansia massiliensis strain Akk1573 chromosome, complete genome blastn 24600 455 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia massiliensis
21610388 21610388 PRJNA774958_P_NODE_35797_length_247_cov_0.885057_g35550_i0 PRJNA774958 35797 247 0.885057 2.18609079 Akkermansia 239934 Bacteria Bacteria 457 4.05e-124   NTclustered gi|1805957841|gb|CP029701.1| 2927224 g35550 i0 100 65.9635627530364 247 0 100 0 1 247 1095705 1095459 Akkermansia massiliensis strain EB-AMDK-40 chromosome, complete genome blastn 16293 457 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia massiliensis
24159911 24159911 PRJNA774958_P_NODE_36319_length_246_cov_0.890173_g36072_i0 PRJNA774958 36319 246 0.890173 2.18982558 Akkermansia 239934 Bacteria Bacteria 449 6.74e-122   NTclustered gi|2051372449|gb|CP072027.1| 2927224 g36072 i0 99.593 16.9837398373984 246 1 100 0 1 246 1078418 1078173 Akkermansia massiliensis strain Akk1863 chromosome, complete genome blastn 4178 449 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia massiliensis
24159922 24159922 PRJNA774958_P_NODE_38939_length_241_cov_0.916667_g38692_i0 PRJNA774958 38939 241 0.916667 2.20916747 Akkermansia 239934 Bacteria Bacteria 446 8.519999999999999e-121   NTclustered gi|2736739857|gb|CP156916.1| 2927224 g38692 i0 100 15 241 0 100 0 1 241 331992 331752 Akkermansia massiliensis strain Akk273 chromosome, complete genome blastn 3615 446 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia massiliensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;