RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA774958" and tax_clade = "FCB group"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA774958 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
752720 752720 PRJNA774958_P_NODE_31041_length_265_cov_1.604167_g30794_i0 PRJNA774958 31041 265 1.604167 4.25104255 Spirosoma taeanense 2735870 Bacteria Bacteria 285 2.19e-72   NTclustered gi|1843765704|gb|CP053435.1| 2735870 g30794 i0 86.923 202.041509433962 260 27 97 7 1 257 5430504 5430759 Spirosoma taeanense strain TS118 chromosome, complete genome blastn 53541 285 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Cytophagaceae Spirosoma Spirosoma taeanense
4580911 4580911 PRJNA774958_P_NODE_38024_length_243_cov_0.888235_g37777_i0 PRJNA774958 38024 243 0.888235 2.15841105 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 145 3.51e-30   NTclustered gi|2874254107|emb|OY970192.1| 412054 g37777 i0 78.696 0.946502057613169 230 39 93 6 18 242 374303 374079 MAG: uncultured Gemmatimonadales bacterium isolate MFD01721.bin.c.5 genome assembly, chromosome: 1 blastn 230 145 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
21155260 21155260 PRJNA774958_P_NODE_28137_length_286_cov_0.854460_g27890_i0 PRJNA774958 28137 286 0.85446 2.4437556 Elizabethkingia anophelis 1117645 Bacteria Bacteria 52.8 0.026   NTclustered gi|1154263508|gb|CP014339.1| 1117645 g27890 i0 100 0.0979020979020979 28 0 10 0 10 37 1965726 1965753 Elizabethkingia anophelis strain E6809 chromosome, complete genome blastn 28 52.8 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Elizabethkingia Elizabethkingia anophelis
23705552 23705552 PRJNA774958_P_NODE_23819_length_320_cov_0.951417_g23572_i0 PRJNA774958 23819 320 0.951417 3.0445344 Xylanibacter ruminicola 839 Bacteria Bacteria 58.4 6.45e-4   NTclustered gi|294471613|gb|CP002006.1| 264731 g23572 i0 94.737 0.521875 38 1 12 1 222 259 2062314 2062278 Prevotella ruminicola 23, complete genome blastn 167 58.4 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Xylanibacter Xylanibacter ruminicola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;