RNAquarium Metadata Server
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contig_metadata

23 rows where analysis = "blastn", bioproject = "PRJNA773778" and tax_phylum = "Rhodophyta"

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tax_superkingdom 1

tax_phylum 1

  • Rhodophyta · 23 ✖

bioproject 1

  • PRJNA773778 · 23 ✖

analysis 1

  • blastn · 23 ✖

tax_kingdom 0

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
751023 751023 PRJNA773778_S_NODE_26321_length_298_cov_0.955556_g26171_i0 PRJNA773778 26321 298 0.955556 2.84755688 Cyanidioschyzon merolae 45157 Rhodophyta other_Eukaryota 551 2.239999999999999e-152   NTclustered gi|1207901858|ref|XR_002461363.1| 280699 g26171 i0 100 2 298 0 100 0 1 298 653 356 Cyanidioschyzon merolae strain 10D hypothetical transcript miscRNA blastn 596 551 1 Eukaryota     Rhodophyta Bangiophyceae Cyanidiales Cyanidiaceae Cyanidioschyzon Cyanidioschyzon merolae
3302312 3302312 PRJNA773778_S_NODE_34943_length_266_cov_1.595855_g34793_i0 PRJNA773778 34943 266 1.595855 4.2449743 Cyanidioschyzon merolae 45157 Rhodophyta other_Eukaryota 357 4.6e-94   NTclustered gi|544215877|ref|XM_005538027.1| 280699 g34793 i0 100 0.725563909774436 193 0 73 0 1 193 453 645 Cyanidioschyzon merolae strain 10D similar to light harvesting protein partial mRNA blastn 193 357 1 Eukaryota     Rhodophyta Bangiophyceae Cyanidiales Cyanidiaceae Cyanidioschyzon Cyanidioschyzon merolae
3302470 3302470 PRJNA773778_S_NODE_41223_length_250_cov_0.870056_g41073_i0 PRJNA773778 41223 250 0.870056 2.17514 Cyanidioschyzon merolae 45157 Rhodophyta other_Eukaryota 462 8.83e-126   NTclustered gi|544210242|ref|XM_005535466.1| 280699 g41073 i0 100 1 250 0 100 0 1 250 2164 2413 Cyanidioschyzon merolae strain 10D glycogen phosphorylase partial mRNA blastn 250 462 1 Eukaryota     Rhodophyta Bangiophyceae Cyanidiales Cyanidiaceae Cyanidioschyzon Cyanidioschyzon merolae
4579674 4579674 PRJNA773778_S_NODE_45204_length_245_cov_0.895349_g45054_i0 PRJNA773778 45204 245 0.895349 2.19360505 Cyanidioschyzon merolae 45157 Rhodophyta other_Eukaryota 375 1.16e-99   NTclustered gi|33466065|gb|AY286122.1| 280700 g45054 i0 100 1.59591836734694 203 0 100 0 43 245 63501 63703 Cyanidioschyzon merolae DBV201 chromosome 1, complete sequence blastn 391 375 1 Eukaryota     Rhodophyta Bangiophyceae Cyanidiales Cyanidiaceae Cyanidioschyzon Cyanidioschyzon merolae
5854764 5854764 PRJNA773778_S_NODE_33505_length_271_cov_1.166667_g33355_i0 PRJNA773778 33505 271 1.166667 3.16166757 Cyanidioschyzon merolae 45157 Rhodophyta other_Eukaryota 350 7.87e-92   NTclustered gi|544217904|ref|XM_005539039.1| 280699 g33355 i0 100 0.697416974169742 189 0 70 0 23 211 1 189 Cyanidioschyzon merolae strain 10D 40S ribosomal protein S30 partial mRNA blastn 189 350 1 Eukaryota     Rhodophyta Bangiophyceae Cyanidiales Cyanidiaceae Cyanidioschyzon Cyanidioschyzon merolae
7129753 7129753 PRJNA773778_S_NODE_2766_length_669_cov_1.191275_g2623_i0 PRJNA773778 2766 669 1.191275 7.96962975 Cyanidioschyzon merolae 45157 Rhodophyta other_Eukaryota 1225 0   NTclustered gi|544218116|ref|XM_005539145.1| 280699 g2623 i0 99.701 2.69506726457399 669 2 100 0 1 669 1064 396 Cyanidioschyzon merolae strain 10D presumed transcriptional regulator for RuBisCO operon partial mRNA blastn 1803 1225 1 Eukaryota     Rhodophyta Bangiophyceae Cyanidiales Cyanidiaceae Cyanidioschyzon Cyanidioschyzon merolae
8404641 8404641 PRJNA773778_S_NODE_44147_length_246_cov_0.890173_g43997_i0 PRJNA773778 44147 246 0.890173 2.18982558 Cyanidioschyzon merolae 45157 Rhodophyta other_Eukaryota 455 1.4500000000000002e-123   NTclustered gi|544214430|ref|XM_005537305.1| 280699 g43997 i0 100 1 246 0 100 0 1 246 171 416 Cyanidioschyzon merolae strain 10D similar to chlorophyll a/b-binding protein, CP24 partial mRNA blastn 246 455 1 Eukaryota     Rhodophyta Bangiophyceae Cyanidiales Cyanidiaceae Cyanidioschyzon Cyanidioschyzon merolae
9679286 9679286 PRJNA773778_S_NODE_15628_length_362_cov_1.038062_g15478_i0 PRJNA773778 15628 362 1.038062 3.75778444 Cyanidioschyzon merolae 45157 Rhodophyta other_Eukaryota 652 0   NTclustered gi|544213807|ref|XM_005536994.1| 280699 g15478 i0 100 0.975138121546961 353 0 98 0 10 362 514 866 Cyanidioschyzon merolae strain 10D chloroplast ascorbate hydrogen peroxidase, precursor partial mRNA blastn 353 652 1 Eukaryota     Rhodophyta Bangiophyceae Cyanidiales Cyanidiaceae Cyanidioschyzon Cyanidioschyzon merolae
9679936 9679936 PRJNA773778_S_NODE_44268_length_246_cov_0.890173_g44118_i0 PRJNA773778 44268 246 0.890173 2.18982558 Cyanidioschyzon merolae 45157 Rhodophyta other_Eukaryota 440 4.0599999999999984e-119   NTclustered gi|544214228|ref|XM_005537204.1| 280699 g44118 i0 99.585 0.979674796747967 241 1 98 0 1 241 241 1 Cyanidioschyzon merolae strain 10D similar to AhpC/TSA family protein partial mRNA blastn 241 440 1 Eukaryota     Rhodophyta Bangiophyceae Cyanidiales Cyanidiaceae Cyanidioschyzon Cyanidioschyzon merolae
10955597 10955597 PRJNA773778_S_NODE_44489_length_246_cov_0.890173_g44339_i0 PRJNA773778 44489 246 0.890173 2.18982558 Cyanidioschyzon merolae 45157 Rhodophyta other_Eukaryota 455 1.4500000000000002e-123   NTclustered gi|1207901797|ref|XR_002461302.1| 280699 g44339 i0 100 1 246 0 100 0 1 246 308 553 Cyanidioschyzon merolae strain 10D hypothetical transcript miscRNA blastn 246 455 1 Eukaryota     Rhodophyta Bangiophyceae Cyanidiales Cyanidiaceae Cyanidioschyzon Cyanidioschyzon merolae
13505299 13505299 PRJNA773778_S_NODE_48291_length_241_cov_0.916667_g48141_i0 PRJNA773778 48291 241 0.916667 2.20916747 Cyanidioschyzon merolae 45157 Rhodophyta other_Eukaryota 446 8.519999999999999e-121   NTclustered gi|544217563|ref|XM_005538869.1| 280699 g48141 i0 100 1 241 0 100 0 1 241 60 300 Cyanidioschyzon merolae strain 10D biotin carboxylase, chloroplast precursor partial mRNA blastn 241 446 1 Eukaryota     Rhodophyta Bangiophyceae Cyanidiales Cyanidiaceae Cyanidioschyzon Cyanidioschyzon merolae
14779800 14779800 PRJNA773778_S_NODE_25972_length_299_cov_1.362832_g25822_i0 PRJNA773778 25972 299 1.362832 4.07486768 Cyanidioschyzon merolae 45157 Rhodophyta other_Eukaryota 553 6.25e-153   NTclustered gi|544212619|ref|XM_005536401.1| 280699 g25822 i0 100 1 299 0 100 0 1 299 125 423 Cyanidioschyzon merolae strain 10D hypothetical protein partial mRNA blastn 299 553 1 Eukaryota     Rhodophyta Bangiophyceae Cyanidiales Cyanidiaceae Cyanidioschyzon Cyanidioschyzon merolae
14780313 14780313 PRJNA773778_S_NODE_48512_length_241_cov_0.916667_g48362_i0 PRJNA773778 48512 241 0.916667 2.20916747 Cyanidioschyzon merolae 45157 Rhodophyta other_Eukaryota 54.7 0.006   NTclustered gi|544209741|ref|XM_005535216.1| 280699 g48362 i0 100 0.120331950207469 29 0 12 0 213 241 315 287 Cyanidioschyzon merolae strain 10D 60S ribosomal protein L44 partial mRNA blastn 29 54.7 1 Eukaryota     Rhodophyta Bangiophyceae Cyanidiales Cyanidiaceae Cyanidioschyzon Cyanidioschyzon merolae
16054022 16054022 PRJNA773778_S_NODE_4553_length_569_cov_3.953629_g4405_i0 PRJNA773778 4553 569 3.953629 22.49614901 Chondracanthus intermedius 35178 Rhodophyta other_Eukaryota 350 1.78e-91   NTclustered gi|1044641063|gb|KU640325.1| 35178 g4405 i0 81.69 69.2724077328647 426 72 74 6 1 423 841 1263 Chondracanthus intermedius isolate CNU042987 cytochrome c oxidase subunit I (cox1) gene, partial cds; mitochondrial blastn 39416 350 1 Eukaryota     Rhodophyta Florideophyceae Gigartinales Gigartinaceae Chondracanthus Chondracanthus intermedius
17329488 17329488 PRJNA773778_S_NODE_34494_length_268_cov_1.133333_g34344_i0 PRJNA773778 34494 268 1.133333 3.03733244 Cyanidioschyzon merolae 45157 Rhodophyta other_Eukaryota 91.6 5.2e-14   NTclustered gi|544209664|ref|XM_005535178.1| 280699 g34344 i0 100 0.182835820895522 49 0 18 0 1 49 276 324 Cyanidioschyzon merolae strain 10D similar to uncharacterized hematopoietic stem/progenitor cell protein partial mRNA blastn 49 91.6 1 Eukaryota     Rhodophyta Bangiophyceae Cyanidiales Cyanidiaceae Cyanidioschyzon Cyanidioschyzon merolae
18603049 18603049 PRJNA773778_S_NODE_37275_length_259_cov_1.655914_g37125_i0 PRJNA773778 37275 259 1.655914 4.28881726 Cyanidioschyzon merolae 45157 Rhodophyta other_Eukaryota 479 9.13e-131   NTclustered gi|544215374|ref|XM_005537776.1| 280699 g37125 i0 100 1 259 0 100 0 1 259 180 438 Cyanidioschyzon merolae strain 10D phycocyanin-associated rod linker protein partial mRNA blastn 259 479 1 Eukaryota     Rhodophyta Bangiophyceae Cyanidiales Cyanidiaceae Cyanidioschyzon Cyanidioschyzon merolae
19877798 19877798 PRJNA773778_S_NODE_25276_length_302_cov_1.205240_g25126_i0 PRJNA773778 25276 302 1.20524 3.6398248 Cyanidioschyzon merolae 45157 Rhodophyta other_Eukaryota 309 1.5100000000000002e-79   NTclustered gi|544214316|ref|XM_005537248.1| 280699 g25126 i0 98.295 20.2880794701987 176 3 58 0 127 302 1 176 Cyanidioschyzon merolae strain 10D histone H2B partial mRNA blastn 6127 309 1 Eukaryota     Rhodophyta Bangiophyceae Cyanidiales Cyanidiaceae Cyanidioschyzon Cyanidioschyzon merolae
21154101 21154101 PRJNA773778_S_NODE_46977_length_243_cov_0.870588_g46827_i0 PRJNA773778 46977 243 0.870588 2.11552884 Cyanidioschyzon merolae 45157 Rhodophyta other_Eukaryota 444 3.09e-120   NTclustered gi|544210716|ref|XM_005535702.1| 280699 g46827 i0 99.588 1 243 1 100 0 1 243 14 256 Cyanidioschyzon merolae strain 10D similar to glycine cleavage system H protein partial mRNA blastn 243 444 1 Eukaryota     Rhodophyta Bangiophyceae Cyanidiales Cyanidiaceae Cyanidioschyzon Cyanidioschyzon merolae
22428291 22428291 PRJNA773778_S_NODE_23778_length_309_cov_0.978814_g23628_i0 PRJNA773778 23778 309 0.978814 3.02453526 Cyanidioschyzon merolae 45157 Rhodophyta other_Eukaryota 560 3.88e-155   NTclustered gi|544218452|ref|XM_005539313.1| 280699 g23628 i0 99.353 1 309 2 100 0 1 309 156 464 Cyanidioschyzon merolae strain 10D adenylate kinase partial mRNA blastn 309 560 1 Eukaryota     Rhodophyta Bangiophyceae Cyanidiales Cyanidiaceae Cyanidioschyzon Cyanidioschyzon merolae
22428356 22428356 PRJNA773778_S_NODE_26838_length_295_cov_2.355856_g26688_i0 PRJNA773778 26838 295 2.355856 6.9497752 Cyanidioschyzon merolae 45157 Rhodophyta other_Eukaryota 453 6.420000000000001e-123   NTclustered gi|544211320|ref|XM_005536003.1| 280699 g26688 i0 100 0.830508474576271 245 0 83 0 51 295 1 245 Cyanidioschyzon merolae strain 10D hypothetical protein, conserved partial mRNA blastn 245 453 1 Eukaryota     Rhodophyta Bangiophyceae Cyanidiales Cyanidiaceae Cyanidioschyzon Cyanidioschyzon merolae
22428640 22428640 PRJNA773778_S_NODE_39138_length_254_cov_1.204420_g38988_i0 PRJNA773778 39138 254 1.20442 3.0592268 Cyanidioschyzon merolae 45157 Rhodophyta other_Eukaryota 470 5.37e-128   NTclustered gi|544213292|ref|XM_005536737.1| 280699 g38988 i0 100 1 254 0 100 0 1 254 203 456 Cyanidioschyzon merolae strain 10D hypothetical protein partial mRNA blastn 254 470 1 Eukaryota     Rhodophyta Bangiophyceae Cyanidiales Cyanidiaceae Cyanidioschyzon Cyanidioschyzon merolae
22884939 22884939 PRJNA773778_S_NODE_21618_length_320_cov_1.246964_g21468_i0 PRJNA773778 21618 320 1.246964 3.9902848 Cyanidioschyzon 45156 Rhodophyta other_Eukaryota 492 1.49e-134   NTclustered gi|51241758|dbj|AB159597.1| 45157 g21468 i0 100 1.6625 266 0 83 0 1 266 266 1 Cyanidioschyzon merolae psbO gene for oxygen-evolving enhancer, partial cds blastn 532 492 1 Eukaryota     Rhodophyta Bangiophyceae Cyanidiales Cyanidiaceae Cyanidioschyzon Cyanidioschyzon merolae
23703924 23703924 PRJNA773778_S_NODE_25299_length_302_cov_1.008734_g25149_i0 PRJNA773778 25299 302 1.008734 3.04637668 Cyanidioschyzon merolae 45157 Rhodophyta other_Eukaryota 163 1.24e-35   NTclustered gi|544213304|ref|XM_005536743.1| 280699 g25149 i0 100 0.291390728476821 88 0 29 0 1 88 561 648 Cyanidioschyzon merolae strain 10D hypothetical protein partial mRNA blastn 88 163 1 Eukaryota     Rhodophyta Bangiophyceae Cyanidiales Cyanidiaceae Cyanidioschyzon Cyanidioschyzon merolae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;