RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA773778" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA773778 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5035575 5035575 PRJNA773778_S_NODE_21044_length_323_cov_1.312000_g20894_i0 PRJNA773778 21044 323 1.312 4.23776 Bacteria 2 Bacteria Bacteria 592 1.4499999999999999e-164   NTclustered gi|2323240586|gb|CP109819.1| 195 g20894 i0 99.69 101.188854489164 323 1 100 0 1 323 741052 740730 Campylobacter coli strain CC21NB04a chromosome, complete genome blastn 32684 592 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli
13961284 13961284 PRJNA773778_S_NODE_43431_length_247_cov_0.885057_g43281_i0 PRJNA773778 43431 247 0.885057 2.18609079 root 1 Root_unresolved Root_unresolved 63.9 1.03e-5   NTclustered gi|2222028449|gb|CP094103.1| 210 g43281 i0 100 16.4048582995951 34 0 14 0 214 247 1292721 1292688 Helicobacter pylori strain Hpfe077 chromosome, complete genome blastn 4052 63.9 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
20333746 20333746 PRJNA773778_S_NODE_34296_length_268_cov_2.400000_g34146_i0 PRJNA773778 34296 268 2.4 6.432 root 1 Root_unresolved Root_unresolved 427 3.49e-115   NTclustered gi|2562786027|gb|CP120256.1| 197 g34146 i0 99.573 89.1940298507463 234 1 87 0 35 268 1303418 1303185 Campylobacter jejuni strain PS_41_2021 chromosome, complete genome blastn 23904 427 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
25433895 25433895 PRJNA773778_S_NODE_17560_length_345_cov_3.400735_g17410_i0 PRJNA773778 17560 345 3.400735 11.73253575 Campylobacter 194 Bacteria Bacteria 545 1.23e-150   NTclustered gi|1622745323|gb|CP012543.1| 203 g17410 i0 95.349 11.9130434782609 344 15 99 1 1 343 1523064 1523407 Campylobacter rectus strain ATCC 33238, complete genome blastn 4110 545 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter rectus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;