RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA773778" and tax_clade = "core chlorophytes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 4 ✖

bioproject 1

  • PRJNA773778 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
750660 750660 PRJNA773778_S_NODE_10641_length_420_cov_1.331412_g10491_i0 PRJNA773778 10641 420 1.331412 5.5919304 Codium fragile 3133 Plants Plants 291 7.869999999999997e-74   NTclustered gi|1847694119|ref|NC_048526.1| 3133 g10491 i0 83.548 7.85714285714286 310 51 74 0 1 310 26423 26114 Codium fragile mitochondrion, complete genome blastn 3300 291 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Codiaceae Codium Codium fragile
3302408 3302408 PRJNA773778_S_NODE_38823_length_255_cov_1.016484_g38673_i0 PRJNA773778 38823 255 1.016484 2.5920342 Codium fragile 3133 Plants Plants 388 1.5499999999999998e-103   NTclustered gi|1792260574|gb|MN853876.1| 3133 g38673 i0 94.444 1.98823529411765 252 14 99 0 4 255 35287 35036 Codium fragile chloroplast, complete genome blastn 507 388 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Codiaceae Codium Codium fragile
5855140 5855140 PRJNA773778_S_NODE_49145_length_235_cov_2.296296_g48995_i0 PRJNA773778 49145 235 2.296296 5.3962956 Codium fragile 3133 Plants Plants 180 9.26e-41   NTclustered gi|1847694119|ref|NC_048526.1| 3133 g48995 i0 80.87 3.34893617021277 230 43 98 1 5 234 35103 34875 Codium fragile mitochondrion, complete genome blastn 787 180 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Codiaceae Codium Codium fragile
19877802 19877802 PRJNA773778_S_NODE_25396_length_301_cov_3.118421_g25246_i0 PRJNA773778 25396 301 3.118421 9.38644721 Koliella longiseta 33092 Plants Plants 446 1.0999999999999995e-120   NTclustered gi|371782094|emb|HE610126.1| 33092 g25246 i0 93.355 100.305647840532 301 20 100 0 1 301 4649 4949 Koliella longiseta 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 470-1 blastn 30192 446 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;