RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA773625" and tax_phylum = "Streptophyta"

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tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA773625 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
749379 749379 PRJNA773625_P_NODE_9721_length_164_cov_0.904348_g9706_i0 PRJNA773625 9721 164 0.904348 1.48313072 Phyllostachys edulis 38705 Plants Plants 147 6.109999999999999e-31   NTclustered gi|284434619|gb|GQ252858.1| 38705 g9706 i0 83.051 1.89634146341463 177 15 100 8 1 164 3514 3340 Phyllostachys edulis clone 03109 hypothetical protein and putative transposon protein genes, complete cds blastn 311 147 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Phyllostachys Phyllostachys edulis
10953447 10953447 PRJNA773625_P_NODE_8229_length_167_cov_0.881356_g8214_i0 PRJNA773625 8229 167 0.881356 1.47186452 Phyllostachys edulis 38705 Plants Plants 213 6.07e-51   NTclustered gi|440577350|emb|FO203441.1| 38705 g8214 i0 89.535 3.91616766467066 172 12 100 5 1 167 92130 92300 Phyllostachys heterocycla genomic DNA, BAC clone: PH01B035L11, complete sequence blastn 654 213 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Phyllostachys Phyllostachys edulis
18601034 18601034 PRJNA773625_P_NODE_3955_length_216_cov_0.952096_g3940_i0 PRJNA773625 3955 216 0.952096 2.05652736 Humulus japonicus 3485 Plants Plants 340 3.629999999999999e-89   NTclustered gi|1917169985|gb|MN971582.1| 3485 g3940 i0 98.947 2.77314814814815 190 2 88 0 27 216 289 478 Humulus japonicus pathogenesis-related 1 allergen mRNA, complete cds blastn 599 340 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Cannabaceae Humulus Humulus japonicus
21151940 21151940 PRJNA773625_P_NODE_7877_length_168_cov_0.873950_g7862_i0 PRJNA773625 7877 168 0.87395 1.468236 Phyllostachys edulis 38705 Plants Plants 195 2.22e-45   NTclustered gi|440577297|emb|FO203437.1| 38705 g7862 i0 87.574 3.67261904761905 169 19 100 2 1 168 132055 131888 Phyllostachys heterocycla genomic DNA, BAC clone: PH01B001I13, complete sequence blastn 617 195 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Phyllostachys Phyllostachys edulis
22426716 22426716 PRJNA773625_P_NODE_8858_length_166_cov_0.888889_g8843_i0 PRJNA773625 8858 166 0.888889 1.47555574 Oryza sativa 4530 Plants Plants 137 3.73e-28   NTclustered gi|2668294532|dbj|AP027387.1| 1771142 g8843 i0 82.39 12.0301204819277 159 26 95 1 8 164 10078076 10077918 Oryza sativa indica subgroup Inn Ma Yebaw DNA, chromosome: 3 blastn 1997 137 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
23702331 23702331 PRJNA773625_P_NODE_9379_length_165_cov_0.896552_g9364_i0 PRJNA773625 9379 165 0.896552 1.4793108 Phyllostachys edulis 38705 Plants Plants 178 2.18e-40   NTclustered gi|284434607|gb|GQ252852.1| 38705 g9364 i0 86.42 3.16969696969697 162 22 98 0 3 164 771 932 Phyllostachys edulis clone 03096 putative transposon protein gene, partial cds blastn 523 178 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Phyllostachys Phyllostachys edulis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;