RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA773247" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA773247 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3300260 3300260 PRJNA773247_P_NODE_6323_length_681_cov_2.319079_g6242_i0 PRJNA773247 6323 681 2.319079 15.79292799 Nitrospirales bacterium 2358460 Bacteria Bacteria 54.7 0.019   NTclustered gi|2626255414|emb|OY843588.1| 2358460 g6242 i0 100 0.0425844346549192 29 0 4 0 217 245 995842 995870 MAG: Nitrospirales bacterium isolate 9819de21-22ad-4990-9a47-e653be90bc7c genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales     Nitrospirales bacterium
5852400 5852400 PRJNA773247_P_NODE_23125_length_293_cov_9.036364_g23041_i0 PRJNA773247 23125 293 9.036364 26.47654652 Nitrospira sp. 70125 Bacteria Bacteria 261 4.15e-65   NTclustered gi|2511640680|gb|CP126121.1| 70125 g23041 i0 83.696 0.9419795221843 276 45 94 0 1 276 3978348 3978073 MAG: Nitrospira sp. isolate bin_001 chromosome, complete genome blastn 276 261 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;