RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA773247" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA773247 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2024961 2024961 PRJNA773247_P_NODE_36502_length_227_cov_2.889610_g36418_i0 PRJNA773247 36502 227 2.88961 6.5594147 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 67.6 7.22e-7   NTclustered gi|2874253766|emb|OY969711.1| 1672391 g36418 i0 97.436 0.171806167400881 39 1 17 0 71 109 280004 280042 MAG: uncultured Chloroflexia bacterium isolate MFD09730.bin.c.1 genome assembly, chromosome: 1 blastn 39 67.6 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
3299966 3299966 PRJNA773247_P_NODE_19383_length_327_cov_3.299213_g19299_i0 PRJNA773247 19383 327 3.299213 10.78842651 Anaerolineales bacterium 2073117 Bacteria Bacteria 207 6.1999999999999985e-49   NTclustered gi|2076445013|gb|CP075367.1| 2073117 g19299 i0 82.231 9.59633027522936 242 41 74 2 60 300 622582 622342 MAG: Anaerolineales bacterium isolate ACE_CHL1 chromosome blastn 3138 207 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
9677567 9677567 PRJNA773247_P_NODE_5708_length_729_cov_6.946646_g5628_i0 PRJNA773247 5708 729 6.946646 50.64104934 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 547 7.629999999999997e-151   NTclustered gi|2874253860|emb|OY969916.1| 1672391 g5628 i0 82.326 86.7558299039781 645 101 87 13 40 674 8160732 8161373 MAG: uncultured Chloroflexia bacterium isolate MFD01916.bin.3.39 genome assembly, chromosome: 1 blastn 63245 547 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
13502568 13502568 PRJNA773247_P_NODE_23031_length_294_cov_3.276018_g22947_i0 PRJNA773247 23031 294 3.276018 9.63149292 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 119 2.65e-22   NTclustered gi|2874254066|emb|OY970149.1| 1672391 g22947 i0 80.247 1.06122448979592 162 29 55 3 1 161 797264 797423 MAG: uncultured Chloroflexia bacterium isolate MFD05747.bin.c.2 genome assembly, chromosome: 1 blastn 312 119 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
17327027 17327027 PRJNA773247_P_NODE_11934_length_444_cov_6.280323_g11851_i0 PRJNA773247 11934 444 6.280323 27.88463412 Candidatus Promineifilum breve 1806508 Bacteria Bacteria 292 2.3299999999999993e-74   NTclustered gi|1027790743|emb|LN890657.1| 1806508 g11851 i0 91.509 29.1081081081081 212 18 48 0 1 212 3024 2813 Ardenticatena sp. Cfx-K strain Cfx-K genome assembly, plasmid: III blastn 12924 292 1 Bacteria   Bacillati Chloroflexota Ardenticatenia Candidatus Promineifilales Candidatus Promineifilaceae Candidatus Promineifilum Candidatus Promineifilum breve
23701904 23701904 PRJNA773247_P_NODE_29959_length_252_cov_1.910615_g29875_i0 PRJNA773247 29959 252 1.910615 4.8147498 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 54.7 0.006   NTclustered gi|2893358379|emb|OZ220673.1| 2026734 g29875 i0 100 0.115079365079365 29 0 12 0 220 248 2373663 2373635 MAG: Dehalococcoidia bacterium isolate 74ad39ee-730f-4e91-a86b-9a5c45ef094d genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;