RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA773247" and tax_kingdom = "Methanobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 9 ✖

tax_clade 1

bioproject 1

  • PRJNA773247 · 9 ✖

analysis 1

  • blastn · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10953229 10953229 PRJNA773247_P_NODE_7569_length_599_cov_3.062738_g7486_i0 PRJNA773247 7569 599 3.062738 18.34580062 Halalkalicoccus jeotgali 413810 Archaea Archaea 1003 0   NTclustered gi|299126453|gb|CP002064.1| 795797 g7486 i0 96.985 0.996661101836394 597 18 99 0 3 599 265780 265184 Halalkalicoccus jeotgali B3 plasmid 2, complete sequence blastn 597 1003 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halalkalicoccus Halalkalicoccus jeotgali
10953258 10953258 PRJNA773247_P_NODE_8929_length_536_cov_3.436285_g8846_i0 PRJNA773247 8929 536 3.436285 18.4184876 Halalkalicoccus jeotgali 413810 Archaea Archaea 405 3.51e-108   NTclustered gi|299123054|gb|CP002062.1| 795797 g8846 i0 80.561 2.26119402985075 535 97 99 7 6 536 214886 215417 Halalkalicoccus jeotgali B3, complete genome blastn 1212 405 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halalkalicoccus Halalkalicoccus jeotgali
12686632 12686632 PRJNA773247_P_NODE_25130_length_279_cov_6.519417_g25046_i0 PRJNA773247 25130 279 6.519417 18.18917343 Halorubrum 56688 Archaea Archaea 56.5 0.002   NTclustered gi|1848526000|gb|CP053941.1| 2739057 g25046 i0 97.059 0.372759856630824 34 0 12 1 47 80 1531636 1531604 Halorubrum salinarum strain RHB-C chromosome, complete genome blastn 104 56.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum salinarum
14777553 14777553 PRJNA773247_P_NODE_15852_length_371_cov_2.402685_g15768_i0 PRJNA773247 15852 371 2.402685 8.91396135 Halalkalicoccus jeotgali 413810 Archaea Archaea 414 3.91e-111   NTclustered gi|299123054|gb|CP002062.1| 795797 g15768 i0 86.828 81.9137466307278 372 47 100 2 1 371 2029083 2029453 Halalkalicoccus jeotgali B3, complete genome blastn 30390 414 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halalkalicoccus Halalkalicoccus jeotgali
16051314 16051314 PRJNA773247_P_NODE_15173_length_381_cov_6.344156_g15089_i0 PRJNA773247 15173 381 6.344156 24.17123436 Haloterrigena salifodinae 2675099 Archaea Archaea 52.8 0.036   NTclustered gi|1988313350|gb|CP069188.1| 2675099 g15089 i0 100 0.073490813648294 28 0 7 0 14 41 121443 121470 Haloterrigena salifodinae strain BOL5-1 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Haloterrigena Haloterrigena salifodinae
21151594 21151594 PRJNA773247_P_NODE_35117_length_240_cov_3.143713_g35033_i0 PRJNA773247 35117 240 3.143713 7.5449112 Halobellus limi 699433 Archaea Archaea 62.1 3.59e-5   NTclustered gi|1621075116|gb|CP031311.1| 699433 g35033 i0 97.297 1.4 37 0 15 1 98 134 2957913 2957878 Halobellus limi strain CGMCC 1.10331 chromosome, complete genome blastn 336 62.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halobellus Halobellus limi
22426036 22426036 PRJNA773247_P_NODE_14218_length_397_cov_2.484568_g14134_i0 PRJNA773247 14218 397 2.484568 9.86373496 Haloprofundus salinisoli 2876193 Archaea Archaea 52.8 0.038   NTclustered gi|2099489100|gb|CP083663.1| 2876193 g14134 i0 100 0.0705289672544081 28 0 7 0 89 116 2107044 2107017 Haloprofundus salinisoli strain SQT7-1 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloprofundus Haloprofundus salinisoli
23701823 23701823 PRJNA773247_P_NODE_23279_length_292_cov_4.684932_g23195_i0 PRJNA773247 23279 292 4.684932 13.68000144 Halalkalicoccus jeotgali 413810 Archaea Archaea 54.7 0.008   NTclustered gi|299123054|gb|CP002062.1| 795797 g23195 i0 100 0.0993150684931507 29 0 10 0 126 154 2143302 2143274 Halalkalicoccus jeotgali B3, complete genome blastn 29 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halalkalicoccus Halalkalicoccus jeotgali
23701998 23701998 PRJNA773247_P_NODE_36479_length_227_cov_3.655844_g36395_i0 PRJNA773247 36479 227 3.655844 8.29876588 Natronobacterium lacisalsi 229731 Archaea Archaea 54.7 0.006   NTclustered gi|1134496220|gb|CP019285.1| 358396 g36395 i0 96.875 0.140969162995595 32 1 14 0 159 190 577095 577126 Halobiforma lacisalsi AJ5, complete genome blastn 32 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronobacterium Natronobacterium lacisalsi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;