RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA772154" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA772154 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
747379 747379 PRJNA772154_P_NODE_19301_length_249_cov_1.227273_g19116_i0 PRJNA772154 19301 249 1.227273 3.05590977 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 333 7.189999999999999e-87   NTclustered gi|2893356071|emb|OZ220494.1| 2053517 g19116 i0 90.837 198.939759036145 251 20 99 3 2 249 964520 964770 MAG: Bdellovibrionales bacterium isolate 95f108ca-4012-4f55-a596-77f5f94b2342 genome assembly, chromosome: 1 blastn 49536 333 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
10135400 10135400 PRJNA772154_P_NODE_20368_length_247_cov_0.896552_g20183_i0 PRJNA772154 20368 247 0.896552 2.21448344 Bdellovibrio 958 Bacteria Bacteria 193 1.26e-44   NTclustered gi|2800948966|gb|CP168973.1| 959 g20183 i0 80.816 8.67206477732794 245 47 99 0 1 245 835969 836213 Bdellovibrio bacteriovorus strain HK2 chromosome, complete genome blastn 2142 193 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;