RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA772154" and tax_clade = "Sar"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA772154 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12227338 12227338 PRJNA772154_P_NODE_9250_length_379_cov_1.326797_g9065_i0 PRJNA772154 9250 379 1.326797 5.02856063 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 237 9.29e-58   NTclustered gi|829192616|ref|XM_001029813.3| 312017 g9065 i0 78.378 2.85751978891821 370 76 97 4 3 370 1 368 Tetrahymena thermophila SB210 60S ribosomal protein L15 partial mRNA blastn 1083 237 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
15235328 15235328 PRJNA772154_P_NODE_23172_length_219_cov_2.390411_g22987_i0 PRJNA772154 23172 219 2.390411 5.23500009 Globigerinidae 45998 SAR_Eukaryotes SAR_Eukaryotes 265 2.29e-66   NTclustered gi|406781098|gb|JQ004156.1| 45991 g22987 i0 100 69.8538812785388 143 0 87 0 27 169 405 263 Globigerinoides sacculifer isolate AO0154 18S ribosomal RNA gene, partial sequence blastn 15298 265 1 Eukaryota Sar   Foraminifera   Rotaliida Globigerinidae Globigerinoides Globigerinoides sacculifer
16050142 16050142 PRJNA772154_P_NODE_4953_length_579_cov_2.594862_g4770_i0 PRJNA772154 4953 579 2.594862 15.02425098 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 1051 0   NTclustered gi|2651357788|gb|PP174303.1| 41631 g4770 i0 99.481 66.7910189982729 578 3 99 0 1 578 3404 3981 Colpoda sp. isolate CIL1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 38672 1051 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
21608961 21608961 PRJNA772154_P_NODE_15117_length_279_cov_1.470874_g14932_i0 PRJNA772154 15117 279 1.470874 4.10373846 Colpodidae 5978 SAR_Eukaryotes SAR_Eukaryotes 514 2.73e-141   NTclustered gi|2067012198|gb|MZ557838.1| 5980 g14932 i0 100 99.4516129032258 278 0 99 0 1 278 65 342 Colpoda inflata isolate ZL20210414 small subunit ribosomal RNA gene, partial sequence blastn 27747 514 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda inflata
22424577 22424577 PRJNA772154_P_NODE_16138_length_267_cov_1.608247_g15953_i0 PRJNA772154 16138 267 1.608247 4.29401949 Sterkiella histriomuscorum 94289 SAR_Eukaryotes SAR_Eukaryotes 78.7 4.03e-10   NTclustered gi|47175615|gb|AY617195.1| 94289 g15953 i0 83.721 0.468164794007491 86 11 31 1 184 266 198 283 Sterkiella histriomuscorum clone UGC1O0001_D01_F genomic sequence blastn 125 78.7 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Sterkiella Sterkiella histriomuscorum
22424795 22424795 PRJNA772154_P_NODE_4518_length_618_cov_1.715596_g4337_i0 PRJNA772154 4518 618 1.715596 10.60238328 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 1031 0   NTclustered gi|2651357788|gb|PP174303.1| 41631 g4337 i0 96.764 92.0258899676375 618 20 100 0 1 618 1885 2502 Colpoda sp. isolate CIL1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 56872 1031 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;