RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA772154" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA772154 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2023376 2023376 PRJNA772154_P_NODE_20442_length_247_cov_0.896552_g20257_i0 PRJNA772154 20442 247 0.896552 2.21448344 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 446 8.759999999999998e-121   NTclustered gi|290981332|ref|XM_002673339.1| 5762 g20257 i0 99.19 1 247 2 100 0 1 247 564 318 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_51637), partial mRNA blastn 247 446 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
12227128 12227128 PRJNA772154_P_NODE_21410_length_245_cov_0.906977_g21225_i0 PRJNA772154 21410 245 0.906977 2.22209365 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 420 5.26e-113   NTclustered gi|290978612|ref|XM_002671984.1| 5762 g21225 i0 97.551 1 245 6 100 0 1 245 3 247 Naegleria gruberi transcriptional intermediary factor 1 alpha (NAEGRDRAFT_81359), partial mRNA blastn 245 420 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;