RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA772154" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA772154 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2023472 2023472 PRJNA772154_P_NODE_4022_length_668_cov_2.080672_g3846_i0 PRJNA772154 4022 668 2.080672 13.89888896 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 257 1.31e-63   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g3846 i0 84.674 35.8967065868263 261 37 39 3 222 481 4490 4232 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 23979 257 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
10951771 10951771 PRJNA772154_P_NODE_9909_length_363_cov_3.506897_g9724_i0 PRJNA772154 9909 363 3.506897 12.73003611 Phryganella acropodia 2723889 Tubulinea other_Eukaryota 460 4.83e-125   NTclustered gi|1827549460|gb|MT274321.1| 2723889 g9724 i0 89.589 69.1542699724518 365 34 100 4 1 363 313 675 Phryganella acropodia isolate Dutch_ small subunit ribosomal RNA gene, partial sequence blastn 25103 460 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Phryganellidae Phryganella Phryganella acropodia
13501381 13501381 PRJNA772154_P_NODE_8511_length_398_cov_4.129231_g8326_i0 PRJNA772154 8511 398 4.129231 16.43433938 Thecamoeba sp. 1973049 Discosea other_Eukaryota 719 0   NTclustered gi|2716342294|gb|PP647606.1| 1973049 g8326 i0 99.246 47.1934673366834 398 3 100 0 1 398 1503 1900 Thecamoeba sp. isolate SK13-4H small subunit ribosomal RNA gene, partial sequence blastn 18783 719 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba sp.
19874224 19874224 PRJNA772154_P_NODE_22696_length_242_cov_0.923077_g22511_i0 PRJNA772154 22696 242 0.923077 2.23384634 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 350 6.9e-92   NTclustered gi|345452570|gb|JF694303.1| 1078836 g22511 i0 92.917 99.4710743801653 240 17 99 0 1 240 604 365 Cryptodifflugia operculata clone 7 actin gene, partial cds blastn 24072 350 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;