RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA771359" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA771359 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12226731 12226731 PRJNA771359_S_NODE_2290_length_222_cov_1.443243_g2207_i0 PRJNA771359 2290 222 1.443243 3.20399946 Mus musculus 10090 Chordata Chordata 355 1.34e-93   NTclustered gi|2904935163|gb|PQ738086.1| 10090 g2207 i0 95.536 102.90990990991 224 7 100 3 1 222 108 330 Mus musculus lncRNA, complete sequence blastn 22846 355 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
13500814 13500814 PRJNA771359_S_NODE_5151_length_151_cov_2.008772_g5068_i0 PRJNA771359 5151 151 2.008772 3.03324572 Cuculus canorus 55661 Chordata Chordata 56.5 0.001   NTclustered gi|2452585706|ref|XM_054063658.1| 55661 g5068 i0 100 0.615894039735099 30 0 20 0 116 145 1598 1569 PREDICTED: Cuculus canorus family with sequence similarity 98 member A (FAM98A), mRNA blastn 93 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Cuculiformes Cuculidae Cuculus Cuculus canorus
19873814 19873814 PRJNA771359_S_NODE_2876_length_197_cov_7.150000_g2793_i0 PRJNA771359 2876 197 7.15 14.0855 Hyla sarda 327740 Chordata Chordata 56.5 0.001   NTclustered gi|2512160518|ref|XM_056558461.1| 327740 g2793 i0 100 2.89340101522843 30 0 15 0 1 30 3949 3978 PREDICTED: Hyla sarda MAX network transcriptional repressor (MNT), transcript variant X2, mRNA blastn 570 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hylidae Hyla Hyla sarda

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;