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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA770826" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 10 ✖

tax_clade 1

bioproject 1

  • PRJNA770826 · 10 ✖

analysis 1

  • blastn · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4575108 4575108 PRJNA770826_P_NODE_12264_length_229_cov_3.177778_g12093_i0 PRJNA770826 12264 229 3.177778 7.27711162 Hartmannella cantabrigiensis 239731 Tubulinea other_Eukaryota 285 1.85e-72   NTclustered gi|33946358|gb|AY294158.1| 239731 g12093 i0 89.083 88.9912663755458 229 25 100 0 1 229 254 26 Hartmannella cantabrigiensis actin mRNA, complete cds blastn 20379 285 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Hartmannella Hartmannella cantabrigiensis
4575234 4575234 PRJNA770826_P_NODE_504_length_1114_cov_28.676056_g425_i0 PRJNA770826 504 1114 28.676056 319.45126384 Copromyxa protea 931554 Tubulinea other_Eukaryota 809 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g425 i0 80.993 2.38330341113106 1047 176 93 18 84 1114 1382 343 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 2655 809 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
5850427 5850427 PRJNA770826_P_NODE_2585_length_540_cov_5.336049_g2417_i0 PRJNA770826 2585 540 5.336049 28.8146646 Pyxidicula operculata 1078852 Tubulinea other_Eukaryota 841 0   NTclustered gi|345452598|gb|JF694317.1| 1078852 g2417 i0 95.292 98.9888888888889 531 24 98 1 10 540 640 111 Pyxidicula operculata clone 2 actin gene, partial cds blastn 53454 841 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida   Pyxidicula Pyxidicula operculata
13500715 13500715 PRJNA770826_P_NODE_5131_length_375_cov_3.134969_g4960_i0 PRJNA770826 5131 375 3.134969 11.75613375 Pyxidicula operculata 1078852 Tubulinea other_Eukaryota 693 0   NTclustered gi|345294028|gb|JF694284.1| 1078852 g4960 i0 100 69.6293333333333 375 0 100 0 1 375 901 1275 Pyxidicula operculata small subunit ribosomal RNA gene, partial sequence blastn 26111 693 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida   Pyxidicula Pyxidicula operculata
16049573 16049573 PRJNA770826_P_NODE_513_length_1105_cov_29.258523_g425_i1 PRJNA770826 513 1105 29.258523 323.30667915 Copromyxa protea 931554 Tubulinea other_Eukaryota 837 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g425 i1 81.429 2.4316742081448 1050 172 94 18 72 1105 1385 343 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 2687 837 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
16049602 16049602 PRJNA770826_P_NODE_873_length_896_cov_30.332940_g425_i4 PRJNA770826 873 896 30.33294 271.7831424 Copromyxa protea 931554 Tubulinea other_Eukaryota 667 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g425 i4 80.562 2.63839285714286 890 154 98 17 21 896 1227 343 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 2364 667 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
17325288 17325288 PRJNA770826_P_NODE_574_length_1061_cov_28.289526_g425_i2 PRJNA770826 574 1061 28.289526 300.15187086 Copromyxa protea 931554 Tubulinea other_Eukaryota 832 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g425 i2 81.322 7.4062205466541 1044 178 97 15 4 1034 1040 1 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 7858 832 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
18598704 18598704 PRJNA770826_P_NODE_4135_length_424_cov_2.080000_g3964_i0 PRJNA770826 4135 424 2.08 8.8192 Pyxidicula operculata 1078852 Tubulinea other_Eukaryota 556 7.099999999999998e-154   NTclustered gi|345452598|gb|JF694317.1| 1078852 g3964 i0 90.521 99.6556603773585 422 38 99 2 4 424 526 106 Pyxidicula operculata clone 2 actin gene, partial cds blastn 42254 556 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida   Pyxidicula Pyxidicula operculata
22424281 22424281 PRJNA770826_P_NODE_618_length_1031_cov_28.478615_g425_i3 PRJNA770826 618 1031 28.478615 293.61452065 Copromyxa protea 931554 Tubulinea other_Eukaryota 821 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g425 i3 81.172 3.64403491755577 1041 179 99 15 4 1031 1040 4 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 3757 821 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
23699858 23699858 PRJNA770826_P_NODE_2419_length_559_cov_3.031373_g2252_i0 PRJNA770826 2419 559 3.031373 16.94537507 Pyxidicula operculata 1078852 Tubulinea other_Eukaryota 1005 0   NTclustered gi|345294028|gb|JF694284.1| 1078852 g2252 i0 99.106 76.5366726296959 559 5 100 0 1 559 771 213 Pyxidicula operculata small subunit ribosomal RNA gene, partial sequence blastn 42784 1005 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida   Pyxidicula Pyxidicula operculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;