RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA770826" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA770826 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4575194 4575194 PRJNA770826_P_NODE_33944_length_165_cov_0.896552_g33773_i0 PRJNA770826 33944 165 0.896552 1.4793108 Minicystis rosea 888845 Bacteria Bacteria 206 1e-48   NTclustered gi|1127353251|gb|CP016211.1| 888845 g33773 i0 90 55.5393939393939 160 14 96 2 7 165 7809018 7809176 Minicystis rosea strain DSM 24000 chromosome, complete genome blastn 9164 206 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Minicystis Minicystis rosea
16049586 16049586 PRJNA770826_P_NODE_7153_length_309_cov_1.715385_g6982_i0 PRJNA770826 7153 309 1.715385 5.30053965 Sandaracinus amylolyticus 927083 Bacteria Bacteria 327 4.28e-85   NTclustered gi|816953346|gb|CP011125.1| 927083 g6982 i0 85.852 201.155339805825 311 41 100 2 1 309 8614997 8614688 Sandaracinus amylolyticus strain DSM 53668, complete genome blastn 62157 327 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae Sandaracinus Sandaracinus amylolyticus
24158368 24158368 PRJNA770826_P_NODE_32099_length_166_cov_0.888889_g31928_i0 PRJNA770826 32099 166 0.888889 1.47555574 Myxococcales 29 Bacteria Bacteria 104 3.78e-18   NTclustered gi|2579675135|gb|CP043493.1| 83451 g31928 i0 94.118 12.8012048192771 68 4 41 0 20 87 8680077 8680010 Archangium violaceum strain Cbvi 34 chromosome, complete genome blastn 2125 104 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium violaceum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;