RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA770826" and tax_phylum = "Echinodermata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA770826 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
746852 746852 PRJNA770826_P_NODE_19561_length_183_cov_1.470149_g19390_i0 PRJNA770826 19561 183 1.470149 2.69037267 Patiria miniata 46514 Echinodermata other_Eukaryota 62.1 2.59e-5   NTclustered gi|1944937624|ref|XM_038188998.1| 46514 g19390 i0 84.375 2.10928961748634 64 8 34 2 93 155 448 386 PREDICTED: Patiria miniata elongation factor 1-beta-like (LOC119719536), mRNA blastn 386 62.1 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
3298084 3298084 PRJNA770826_P_NODE_21603_length_174_cov_1.248000_g21432_i0 PRJNA770826 21603 174 1.248 2.17152 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 161 2.33e-35   NTclustered gi|1752395070|ref|XM_030999610.1| 7668 g21432 i0 85.714 80.6666666666667 154 20 88 2 22 174 528 376 PREDICTED: Strongylocentrotus purpuratus ubiquitin-40S ribosomal protein S27a (LOC579019), mRNA blastn 14036 161 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
8400164 8400164 PRJNA770826_P_NODE_4327_length_415_cov_6.040984_g4156_i0 PRJNA770826 4327 415 6.040984 25.0700836 Asterias rubens 7604 Echinodermata other_Eukaryota 279 1.68e-70   NTclustered gi|1834300519|ref|XM_033770303.1| 7604 g4156 i0 78.795 34.1638554216867 415 88 100 0 1 415 519 105 PREDICTED: Asterias rubens calmodulin-like protein 1 (LOC117289261), mRNA blastn 14178 279 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Forcipulatida Asteriidae Asterias Asterias rubens
12226545 12226545 PRJNA770826_P_NODE_14670_length_211_cov_0.950617_g14499_i0 PRJNA770826 14670 211 0.950617 2.00580187 Diadema antillarum 105358 Echinodermata other_Eukaryota 198 2.25e-46   NTclustered gi|2919532506|ref|XM_071655450.1| 105358 g14499 i0 83.81 17.2559241706161 210 32 99 2 1 209 1403 1195 PREDICTED: Diadema antillarum V-type proton ATPase subunit B (LOC139745038), mRNA blastn 3641 198 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Diadematoida Diadematidae Diadema Diadema antillarum
17325304 17325304 PRJNA770826_P_NODE_6994_length_313_cov_1.969697_g6823_i0 PRJNA770826 6994 313 1.969697 6.16515161 Acanthaster planci 133434 Echinodermata other_Eukaryota 239 2.09e-58   NTclustered gi|1229136462|ref|XM_022224529.1| 133434 g6823 i0 82.836 84.3450479233227 268 45 85 1 43 309 2086 1819 PREDICTED: Acanthaster planci ubiquitin-like modifier-activating enzyme 1 (LOC110973608), transcript variant X1, mRNA blastn 26400 239 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Acanthasteridae Acanthaster Acanthaster planci
23699834 23699834 PRJNA770826_P_NODE_18679_length_187_cov_1.760870_g18508_i0 PRJNA770826 18679 187 1.76087 3.2928269 Patiria miniata 46514 Echinodermata other_Eukaryota 187 4.21e-43   NTclustered gi|1944883718|ref|XM_038202922.1| 46514 g18508 i0 85.165 91.9572192513369 182 27 97 0 2 183 288 107 PREDICTED: Patiria miniata dynein light chain LC6, flagellar outer arm (LOC119730150), mRNA blastn 17196 187 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;