RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA770826" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA770826 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
746859 746859 PRJNA770826_P_NODE_21321_length_175_cov_1.238095_g21150_i0 PRJNA770826 21321 175 1.238095 2.16666625 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 124 3.0799999999999994e-24   NTclustered gi|2893358379|emb|OZ220673.1| 2026734 g21150 i0 84.677 3.57142857142857 124 19 71 0 52 175 1945795 1945672 MAG: Dehalococcoidia bacterium isolate 74ad39ee-730f-4e91-a86b-9a5c45ef094d genome assembly, chromosome: 1 blastn 625 124 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
23699821 23699821 PRJNA770826_P_NODE_17559_length_193_cov_1.381944_g17388_i0 PRJNA770826 17559 193 1.381944 2.66715192 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 54.7 0.005   NTclustered gi|2874253860|emb|OY969916.1| 1672391 g17388 i0 100 0.150259067357513 29 0 15 0 28 56 2686785 2686813 MAG: uncultured Chloroflexia bacterium isolate MFD01916.bin.3.39 genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;