RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA770826" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 2 ✖

bioproject 1

  • PRJNA770826 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4575168 4575168 PRJNA770826_P_NODE_24184_length_169_cov_0.866667_g24013_i0 PRJNA770826 24184 169 0.866667 1.46466723 Lentivirus humimdef1 3418650 Viruses Viruses 54.7 0.004   NTclustered gi|2509246065|gb|OQ596834.1| 11676 g24013 i0 100 0.171597633136095 29 0 17 0 19 47 4328 4356 HIV-1 isolate CIS06042-V1-CD4-13 from Belgium nonfunctional gag protein (gag) gene, complete sequence; and nonfunctional pol protein (pol) gene, partial sequence blastn 29 54.7 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
13500651 13500651 PRJNA770826_P_NODE_28311_length_167_cov_0.881356_g28140_i0 PRJNA770826 28311 167 0.881356 1.47186452 Lentivirus simimdef 3418654 Viruses Viruses 71.3 3.87e-8   NTclustered gi|1378939259|gb|MG931190.1| 11723 g28140 i0 95.455 16.0299401197605 44 2 26 0 67 110 324 281 Simian immunodeficiency virus isolate 092N03Pc_109 envelope glycoprotein (env) gene, partial cds blastn 2677 71.3 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus simimdef

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;