RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA770826" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 4 ✖

bioproject 1

  • PRJNA770826 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4575170 4575170 PRJNA770826_P_NODE_25144_length_169_cov_0.866667_g24973_i0 PRJNA770826 25144 169 0.866667 1.46466723 Thecamonas trahens 529818 Root_unresolved Root_unresolved 58.4 3.03e-4   NTclustered gi|923118671|ref|XM_013897357.1| 461836 g24973 i0 100 0.183431952662722 31 0 18 0 17 47 652 622 Thecamonas trahens ATCC 50062 uncharacterized protein (AMSG_11275), partial mRNA blastn 31 58.4 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
5850512 5850512 PRJNA770826_P_NODE_7165_length_309_cov_1.257692_g6994_i0 PRJNA770826 7165 309 1.257692 3.88626828 Thecamonas trahens 529818 Root_unresolved Root_unresolved 52.8 0.029   NTclustered gi|923133358|ref|XM_013904691.1| 461836 g6994 i0 100 0.0906148867313916 28 0 9 0 1 28 125 98 Thecamonas trahens ATCC 50062 pairing protein 2 family protein (AMSG_03303), mRNA blastn 28 52.8 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
7125637 7125637 PRJNA770826_P_NODE_3306_length_476_cov_2.325527_g3135_i0 PRJNA770826 3306 476 2.325527 11.06950852 Thecamonas trahens 529818 Root_unresolved Root_unresolved 143 2.67e-29   NTclustered gi|923136453|ref|XM_013906238.1| 461836 g3135 i0 81.818 0.514705882352941 176 26 36 6 162 334 322 150 Thecamonas trahens ATCC 50062 50S ribosomal protein L36e (AMSG_01644), partial mRNA blastn 245 143 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
16049520 16049520 PRJNA770826_P_NODE_2753_length_523_cov_20.128692_g2584_i0 PRJNA770826 2753 523 20.128692 105.27305916 Cavaliersmithia chaoae 3003318 Root_unresolved Root_unresolved 195 8.05e-45   NTclustered gi|2206682172|gb|OM966645.1| 3003318 g2584 i0 89.172 35.2848948374761 157 16 36 1 64 220 6453 6608 Cavaliersmithia chaoae strain FABANU small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 18454 195 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Cavaliersmithia Cavaliersmithia chaoae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;