RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA770361" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA770361 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5849987 5849987 PRJNA770361_P_NODE_6645_length_363_cov_2.744828_g6550_i0 PRJNA770361 6645 363 2.744828 9.96372564 Sphaerochaetaceae bacterium 2791017 Bacteria Bacteria 289 2.41e-73   NTclustered gi|2621785465|emb|OY781923.1| 2791017 g6550 i0 81.522 14.9862258953168 368 52 99 14 3 362 1663172 1662813 MAG: Sphaerochaetaceae bacterium isolate 77f26d43-b2b0-4d0d-8c29-067165085957 genome assembly, chromosome: 1 blastn 5440 289 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Sphaerochaetaceae   Sphaerochaetaceae bacterium
18598071 18598071 PRJNA770361_P_NODE_14695_length_251_cov_0.876404_g14600_i0 PRJNA770361 14695 251 0.876404 2.19977404 Sphaerochaeta associata 1129264 Bacteria Bacteria 464 2.47e-126   NTclustered gi|2221097576|gb|CP094929.1| 1129264 g14600 i0 100 1.99601593625498 251 0 100 0 1 251 3268986 3268736 Sphaerochaeta associata strain GLS2T chromosome, complete genome blastn 501 464 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Sphaerochaetaceae Sphaerochaeta Sphaerochaeta associata
19873179 19873179 PRJNA770361_P_NODE_19336_length_217_cov_4.319444_g19241_i0 PRJNA770361 19336 217 4.319444 9.37319348 Sphaerochaeta associata 1129264 Bacteria Bacteria 401 1.6499999999999994e-107   NTclustered gi|2221097576|gb|CP094929.1| 1129264 g19241 i0 100 131.073732718894 217 0 100 0 1 217 1401672 1401456 Sphaerochaeta associata strain GLS2T chromosome, complete genome blastn 28443 401 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Sphaerochaetaceae Sphaerochaeta Sphaerochaeta associata
21148920 21148920 PRJNA770361_P_NODE_15817_length_249_cov_0.886364_g15722_i0 PRJNA770361 15817 249 0.886364 2.20704636 Sphaerochaeta associata 1129264 Bacteria Bacteria 460 3.16e-125   NTclustered gi|2221097576|gb|CP094929.1| 1129264 g15722 i0 100 7.15261044176707 249 0 100 0 1 249 3300705 3300953 Sphaerochaeta associata strain GLS2T chromosome, complete genome blastn 1781 460 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Sphaerochaetaceae Sphaerochaeta Sphaerochaeta associata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;