RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA770361" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA770361 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3297700 3297700 PRJNA770361_P_NODE_8103_length_330_cov_19.463035_g8008_i0 PRJNA770361 8103 330 19.463035 64.2280155 Caenorhabditis remanei 31234 Nematoda Nematoda 52.8 0.031   NTclustered gi|2445383759|ref|XM_053732915.1| 31234 g8008 i0 100 0.16969696969697 28 0 8 0 207 234 630 657 Caenorhabditis remanei uncharacterized protein (GCK72_019189), partial mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
10134983 10134983 PRJNA770361_P_NODE_4328_length_452_cov_4.781003_g4233_i0 PRJNA770361 4328 452 4.781003 21.61013356 Rhabditida 6236 Nematoda Nematoda 272 3.0899999999999998e-68   NTclustered gi|268571788|ref|XM_002641103.1| 6238 g4233 i0 79.897 21.7101769911504 388 64 84 12 1 381 387 7 Caenorhabditis briggsae Protein CBR-RPL-23 (Cbr-rpl-23), partial mRNA blastn 9813 274 0.992700729927007 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
13960341 13960341 PRJNA770361_P_NODE_6491_length_368_cov_1.057627_g6396_i0 PRJNA770361 6491 368 1.057627 3.89206736 Metazoa 33208 Nematoda Nematoda 350 1.11e-91   NTclustered gi|1376146183|ref|XM_024653652.1| 34506 g6396 i0 85.337 90.75 341 47 92 3 1 339 1134 795 Strongyloides ratti ATP synthase subunit beta (SRAE_2000256800), partial mRNA blastn 33396 351 0.997150997150997 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
14775314 14775314 PRJNA770361_P_NODE_3732_length_487_cov_90.142512_g3637_i0 PRJNA770361 3732 487 90.142512 438.99403344 Strongyloides papillosus 174720 Nematoda Nematoda 202 4.459999999999999e-47   NTclustered gi|690018840|emb|LM526136.1| 174720 g3637 i0 79.649 5.47022587268994 285 54 58 4 79 361 7759 8041 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000493 blastn 2664 202 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;