RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA770361" and tax_phylum = "Mycoplasmatota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA770361 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16509273 16509273 PRJNA770361_P_NODE_13933_length_252_cov_1.307263_g13838_i0 PRJNA770361 13933 252 1.307263 3.29430276 Mesomycoplasma 2923352 Bacteria Bacteria 466 6.89e-127   NTclustered gi|1958638505|gb|MW498314.1| 2100 g13838 i0 100 98.7539682539683 252 0 100 0 1 252 1428 1679 Mesomycoplasma hyorhinis strain MycSu128 23S ribosomal RNA gene, partial sequence blastn 24886 466 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
20332815 20332815 PRJNA770361_P_NODE_5916_length_386_cov_1.744409_g5821_i0 PRJNA770361 5916 386 1.744409 6.73341874 Mycoplasmopsis 2767358 Bacteria Bacteria 712 0   NTclustered gi|2496025365|gb|CP123300.1| 28903 g5821 i0 100 176.554404145078 385 0 99 0 1 385 483221 482837 Mycoplasmopsis bovis strain 15DD0238 chromosome, complete genome blastn 68150 712 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis bovis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;