RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA770361" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA770361 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8399582 8399582 PRJNA770361_P_NODE_18407_length_243_cov_0.917647_g18312_i0 PRJNA770361 18407 243 0.917647 2.22988221 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 224 4.3899999999999996e-54   NTclustered gi|575462059|gb|CP007130.1| 861299 g18312 i0 84.348 1.06172839506173 230 34 94 2 13 241 63894 63666 Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence blastn 258 224 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
9674933 9674933 PRJNA770361_P_NODE_8348_length_326_cov_0.913043_g8253_i0 PRJNA770361 8348 326 0.913043 2.97652018 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 228 4.739999999999999e-55   NTclustered gi|2874253978|emb|OY970303.1| 412054 g8253 i0 86.19 0.644171779141104 210 29 64 0 1 210 4024000 4023791 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 210 228 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
16509283 16509283 PRJNA770361_P_NODE_16613_length_247_cov_0.896552_g16518_i0 PRJNA770361 16613 247 0.896552 2.21448344 Gemmatimonas 173479 Bacteria Bacteria 289 1.56e-73   NTclustered gi|470475286|ref|NR_076270.1| 173480 g16518 i0 88.163 22.7651821862348 245 26 99 3 4 247 295 53 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 5623 289 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
22423591 22423591 PRJNA770361_P_NODE_14538_length_251_cov_0.876404_g14443_i0 PRJNA770361 14538 251 0.876404 2.19977404 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 185 2.1499999999999994e-42   NTclustered gi|2874253978|emb|OY970303.1| 412054 g14443 i0 86.207 0.693227091633466 174 20 69 2 80 251 2453562 2453391 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 174 185 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;