RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA770361" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA770361 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10950416 10950416 PRJNA770361_P_NODE_16169_length_248_cov_0.891429_g16074_i0 PRJNA770361 16169 248 0.891429 2.21074392 Synergistales bacterium 2268201 Bacteria Bacteria 130 1.01e-25   NTclustered gi|2621703689|emb|OY762654.1| 2268201 g16074 i0 94.186 47.6895161290323 86 3 34 2 146 230 446381 446297 MAG: Synergistales bacterium isolate e2a2af2a-30b9-47e3-8e03-f1be080e1666 genome assembly, chromosome: 1 blastn 11827 130 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales     Synergistales bacterium
16048882 16048882 PRJNA770361_P_NODE_14593_length_251_cov_0.876404_g14498_i0 PRJNA770361 14593 251 0.876404 2.19977404 Mesotoga infera 1236046 Bacteria Bacteria 364 2.57e-96   NTclustered gi|1417721526|emb|LS974202.1| 1236046 g14498 i0 92.829 1 251 18 100 0 1 251 809042 808792 Mesotoga infera isolate MESINF1 genome assembly, chromosome: MESINF blastn 251 364 1 Bacteria   Thermotogati Thermotogota Thermotogae Kosmotogales Kosmotogaceae Mesotoga Mesotoga infera
23699291 23699291 PRJNA770361_P_NODE_16839_length_246_cov_1.352601_g16744_i0 PRJNA770361 16839 246 1.352601 3.32739846 Deinococcus sp. VB343 3385567 Bacteria Bacteria 156 1.65e-33   NTclustered gi|2905211496|gb|CP179945.1| 3385567 g16744 i0 79.545 42.4430894308943 220 43 89 2 28 246 1463475 1463257 Deinococcus sp. VB343 chromosome 1, complete sequence blastn 10441 156 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. VB343

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;