RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA770361" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA770361 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7584405 7584405 PRJNA770361_P_NODE_13106_length_257_cov_8.728261_g13011_i0 PRJNA770361 13106 257 8.728261 22.43163077 Thermodesulfobacteriota 200940 Bacteria Bacteria 475 1.1699999999999999e-129   NTclustered gi|373280262|gb|JN651981.1| 34034 g13011 i0 100 112.996108949416 257 0 100 0 1 257 259 3 Uncultured delta proteobacterium clone BSL34B-2 16S ribosomal RNA gene, partial sequence blastn 29040 475 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
20332791 20332791 PRJNA770361_P_NODE_12976_length_259_cov_1.419355_g12881_i0 PRJNA770361 12976 259 1.419355 3.67612945 root 1 Root_unresolved Root_unresolved 466 7.11e-127   NTclustered gi|202950689|emb|FM206054.1| 34034 g12881 i0 99.225 99.6138996138996 258 2 99 0 2 259 307 50 Uncultured delta proteobacterium partial 16S rRNA gene, clone GW_1 blastn 25800 466 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;