RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA770361" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 8 ✖

bioproject 1

  • PRJNA770361 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8399608 8399608 PRJNA770361_P_NODE_2307_length_625_cov_2.463768_g2213_i0 PRJNA770361 2307 625 2.463768 15.39855 Bracteacoccus minor 50037 Plants Plants 1155 0   NTclustered gi|1008861662|ref|NC_029674.1| 50037 g2213 i0 100 150.92 625 0 100 0 1 625 2911 3535 Bracteacoccus minor strain UTEX 66 chloroplast, complete genome blastn 94325 1155 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Bracteacoccaceae Bracteacoccus Bracteacoccus minor
9674846 9674846 PRJNA770361_P_NODE_2748_length_571_cov_3.246988_g2654_i0 PRJNA770361 2748 571 3.246988 18.54030148 Monoraphidium neglectum 145388 Plants Plants 176 3.2e-39   NTclustered gi|926783375|ref|XM_014044708.1| 145388 g2654 i0 82.828 12.399299474606 198 32 35 2 281 477 245 49 Monoraphidium neglectum 40S ribosomal protein S27-2 mRNA blastn 7080 176 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
10950298 10950298 PRJNA770361_P_NODE_10169_length_295_cov_2.031532_g10074_i0 PRJNA770361 10169 295 2.031532 5.9930194 Pediastrum duplex 3105 Plants Plants 324 5.26e-84   NTclustered gi|21040380|gb|AF183479.2| 3105 g10074 i0 92.14 73.7016949152542 229 18 98 0 67 295 3139 2911 Pediastrum duplex strain UTEX LB 1364 28S ribosomal RNA gene, partial sequence blastn 21742 324 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Hydrodictyaceae Pediastrum Pediastrum duplex
10950371 10950371 PRJNA770361_P_NODE_14069_length_252_cov_0.871508_g13974_i0 PRJNA770361 14069 252 0.871508 2.19620016 Bracteacoccus minor 50037 Plants Plants 466 6.89e-127   NTclustered gi|1008861662|ref|NC_029674.1| 50037 g13974 i0 100 140.678571428571 252 0 100 0 1 252 1185 1436 Bracteacoccus minor strain UTEX 66 chloroplast, complete genome blastn 35451 466 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Bracteacoccaceae Bracteacoccus Bracteacoccus minor
13960347 13960347 PRJNA770361_P_NODE_8251_length_327_cov_1.940945_g8156_i0 PRJNA770361 8251 327 1.940945 6.34689015 Bracteacoccus 50036 Plants Plants 604 1.8799999999999993e-168   NTclustered gi|1008861662|ref|NC_029674.1| 50037 g8156 i0 100 101.085626911315 327 0 100 0 1 327 1937 1611 Bracteacoccus minor strain UTEX 66 chloroplast, complete genome blastn 33055 604 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Bracteacoccaceae Bracteacoccus Bracteacoccus minor
19873163 19873163 PRJNA770361_P_NODE_1836_length_695_cov_3.562701_g1745_i0 PRJNA770361 1836 695 3.562701 24.76077195 Chlamydomonas reinhardtii 3055 Plants Plants 217 2.33e-51   NTclustered gi|2082265902|ref|XM_043070515.1| 3055 g1745 i0 84.793 6.92230215827338 217 31 31 2 293 508 403 188 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_15g635600v5), mRNA blastn 4811 217 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
24973134 24973134 PRJNA770361_P_NODE_960_length_937_cov_2.027778_g889_i0 PRJNA770361 960 937 2.027778 19.00027986 Bracteacoccus minor 50037 Plants Plants 1720 0   NTclustered gi|1008861662|ref|NC_029674.1| 50037 g889 i0 99.787 127.748132337247 937 2 100 0 1 937 2876 1940 Bracteacoccus minor strain UTEX 66 chloroplast, complete genome blastn 119700 1720 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Bracteacoccaceae Bracteacoccus Bracteacoccus minor
25433041 25433041 PRJNA770361_P_NODE_2240_length_636_cov_2.934281_g2147_i0 PRJNA770361 2240 636 2.934281 18.66202716 Bracteacoccus 50036 Plants Plants 863 0   NTclustered gi|6119992|gb|AF183452.1| 50037 g2147 i0 99.787 73.8993710691824 470 1 74 0 1 470 1434 1903 Bracteacoccus minor strain UTEX 66 28S ribosomal RNA gene, partial sequence blastn 47000 863 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Bracteacoccaceae Bracteacoccus Bracteacoccus minor

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;