RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA770361" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA770361 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13960328 13960328 PRJNA770361_P_NODE_18391_length_243_cov_0.917647_g18296_i0 PRJNA770361 18391 243 0.917647 2.22988221 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 54.7 0.006   NTclustered gi|71417274|ref|XM_805427.1| 5693 g18296 i0 100 0.353909465020576 29 0 12 0 189 217 265 293 Trypanosoma cruzi uncharacterized protein (Tc00.1047053510243.80), partial mRNA blastn 86 54.7 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi
19873203 19873203 PRJNA770361_P_NODE_3336_length_516_cov_1.760722_g3241_i0 PRJNA770361 3336 516 1.760722 9.08532552 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 289 3.54e-73   NTclustered gi|290973566|ref|XM_002669473.1| 5762 g3241 i0 91.08 39.5038759689922 213 19 41 0 2 214 1108 1320 Naegleria gruberi beta-tubulin (NAEGRDRAFT_56391), partial mRNA blastn 20384 289 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
19873234 19873234 PRJNA770361_P_NODE_5196_length_413_cov_1.147059_g5101_i0 PRJNA770361 5196 413 1.147059 4.73735367 Seculamonas ecuadoriensis 221724 Root_unresolved Root_unresolved 241 7.89e-59   NTclustered gi|501673477|ref|NC_021128.1| 221724 g5101 i0 78.316 83.4479418886199 392 71 93 11 27 409 10415 10029 Seculamonas ecuadoriensis strain ATCC 50688 mitochondrion, complete genome blastn 34464 241 1 Eukaryota Discoba       Jakobida   Seculamonas Seculamonas ecuadoriensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;