RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA770361" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJNA770361 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3297640 3297640 PRJNA770361_P_NODE_423_length_1337_cov_3.840190_g388_i0 PRJNA770361 423 1337 3.84019 51.3433403 Paramoeba branchiphila 308475 Discosea other_Eukaryota 815 0   NTclustered gi|226347442|gb|FJ807261.1| 308475 g388 i0 78.969 94.1039640987285 1203 245 90 7 38 1236 2 1200 Neoparamoeba branchiphila strain AMOP1 elongation factor 1 alpha gene, partial cds blastn 125817 815 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
5849829 5849829 PRJNA770361_P_NODE_15465_length_249_cov_0.886364_g15370_i0 PRJNA770361 15465 249 0.886364 2.20704636 Heterostelium album 2086695 Evosea other_Eukaryota 252 2.07e-62   NTclustered gi|1160555578|ref|XM_020573614.1| 670386 g15370 i0 85.081 98.0562248995984 248 36 99 1 2 249 805 559 Polysphondylium pallidum PN500 actin partial mRNA blastn 24416 252 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
8399597 8399597 PRJNA770361_P_NODE_1907_length_684_cov_1.785597_g1815_i0 PRJNA770361 1907 684 1.785597 12.21348348 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 867 0   NTclustered gi|221185864|gb|FJ577811.1| 590481 g1815 i0 94.964 45.4488304093567 556 22 81 6 132 684 1 553 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 31087 867 1 Eukaryota Amoebozoa             uncultured Amoebozoa
9674732 9674732 PRJNA770361_P_NODE_14228_length_252_cov_0.871508_g14133_i0 PRJNA770361 14228 252 0.871508 2.19620016 Entamoeba invadens 33085 Evosea other_Eukaryota 52.8 0.023   NTclustered gi|471207746|ref|XM_004260429.1| 370355 g14133 i0 100 0.111111111111111 28 0 11 0 155 182 406 433 Entamoeba invadens IP1 hypothetical protein (EIN_432580) mRNA, complete cds blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba invadens
12225982 12225982 PRJNA770361_P_NODE_13930_length_252_cov_1.307263_g13835_i0 PRJNA770361 13930 252 1.307263 3.29430276 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 228 3.5399999999999984e-55   NTclustered gi|470377128|ref|XM_004333304.1| 1257118 g13835 i0 83.2 4.95238095238095 250 40 99 2 4 252 327 79 Acanthamoeba castellanii str. Neff glutathione S-transferase family protein, putative (ACA1_190760), partial mRNA blastn 1248 228 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
13500196 13500196 PRJNA770361_P_NODE_5271_length_410_cov_1.824926_g5176_i0 PRJNA770361 5271 410 1.824926 7.4821966 Badhamia melanospora 1346252 Evosea other_Eukaryota 289 2.7599999999999996e-73   NTclustered gi|2440757455|gb|OP616491.1| 1346252 g5176 i0 80.811 83.880487804878 370 69 90 2 41 409 44 412 Badhamia melanospora voucher LE318160 translation elongation factor 1-alpha (EF1A) gene, partial cds blastn 34391 289 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Badhamia Badhamia melanospora
13960310 13960310 PRJNA770361_P_NODE_12371_length_267_cov_1.077320_g12276_i0 PRJNA770361 12371 267 1.07732 2.8764444 Vexillifera 218659 Root_unresolved Root_unresolved 285 2.21e-72   NTclustered gi|221185864|gb|FJ577811.1| 590481 g12276 i0 93.684 55.4007490636704 190 12 71 0 35 224 1648 1837 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 14792 285 1 Eukaryota Amoebozoa             uncultured Amoebozoa

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;