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contig_metadata

16 rows where analysis = "blastn", bioproject = "PRJNA768450" and tax_kingdom = "Orthornavirae"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 16 ✖

bioproject 1

  • PRJNA768450 · 16 ✖

analysis 1

  • blastn · 16 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2021340 2021340 PRJNA768450_S_NODE_1042_length_539_cov_5.224490_g999_i0 PRJNA768450 1042 539 5.22449 28.1600011 Betacoronavirus pandemicum 3418604 Viruses Viruses 62.1 8.8e-5   NTclustered gi|2560516847|emb|OY702104.1| 2697049 g999 i0 100 6.30055658627087 33 0 6 0 507 539 23282 23314 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 3396 62.1 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
2021394 2021394 PRJNA768450_S_NODE_11802_length_207_cov_2.335443_g11753_i0 PRJNA768450 11802 207 2.335443 4.83436701 Deltapartitivirus duobetae 3428206 Viruses Viruses 374 3.4e-99   NTclustered gi|523580592|gb|KC845533.1| 912029 g11753 i0 100 7.68115942028986 202 0 98 0 1 202 412 613 Beet cryptic virus 2 isolate Rp coat protein gene, complete cds blastn 1590 374 1 Viruses   Orthornavirae Pisuviricota Duplopiviricetes Durnavirales Partitiviridae Deltapartitivirus Deltapartitivirus duobetae
2021518 2021518 PRJNA768450_S_NODE_14902_length_190_cov_1.737589_g14853_i0 PRJNA768450 14902 190 1.737589 3.3014191 Benyvirus necrobetae 3427127 Viruses Viruses 346 6.690000000000001e-91   NTclustered gi|1512470163|gb|MH106727.1| 31721 g14853 i0 99.474 17.9210526315789 190 1 100 0 1 190 3008 2819 Beet necrotic yellow vein virus isolate Brazilian segment RNA2, complete sequence blastn 3405 346 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Hepelivirales Benyviridae Benyvirus Benyvirus necrobetae
3297148 3297148 PRJNA768450_S_NODE_2843_length_361_cov_8.038462_g2794_i0 PRJNA768450 2843 361 8.0384620000000009 29.01884782 Betacoronavirus pandemicum 3418604 Viruses Viruses 137 9.18e-28   NTclustered gi|2165834218|emb|OV195924.1| 2697049 g2794 i0 97.531 23.7479224376731 81 0 22 2 276 354 352 272 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 8573 137 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
4573929 4573929 PRJNA768450_S_NODE_18184_length_176_cov_3.464567_g18135_i0 PRJNA768450 18184 176 3.464567 6.09763792 Betacoronavirus pandemicum 3418604 Viruses Viruses 60.2 8.87e-5   NTclustered gi|2557393137|emb|OY661705.1| 2697049 g18135 i0 91.111 3.60227272727273 45 3 25 1 1 44 7180 7136 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 634 60.2 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
5034484 5034484 PRJNA768450_S_NODE_15524_length_187_cov_1.971014_g15475_i0 PRJNA768450 15524 187 1.971014 3.68579618 root 1 Root_unresolved Root_unresolved 52.8 0.016   NTclustered gi|2565360070|emb|OY632882.1| 2697049 g15475 i0 100 0.449197860962567 28 0 15 0 1 28 22489 22462 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 84 52.8 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
7124114 7124114 PRJNA768450_S_NODE_1186_length_511_cov_401.487013_g1140_i0 PRJNA768450 1186 511 401.487013 2051.59863643 Betacoronavirus pandemicum 3418604 Viruses Viruses 135 4.83e-27   NTclustered gi|2165834303|emb|OV196009.1| 2697049 g1140 i0 94.382 16.6027397260274 89 3 17 2 1 87 30000 29912 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 8484 135 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
10949553 10949553 PRJNA768450_S_NODE_13809_length_196_cov_1.360544_g13760_i0 PRJNA768450 13809 196 1.360544 2.66666624 Betacoronavirus pandemicum 3418604 Viruses Viruses 52.8 0.017   NTclustered gi|2557641183|emb|OY671812.1| 2697049 g13760 i0 100 0.142857142857143 28 0 14 0 169 196 16421 16448 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 28 52.8 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
10949591 10949591 PRJNA768450_S_NODE_14709_length_191_cov_1.704225_g14660_i0 PRJNA768450 14709 191 1.704225 3.25506975 Tolivirales sp. 2809914 Viruses Viruses 291 3.2000000000000003e-74   NTclustered gi|2647549457|gb|OR843652.1| 2809914 g14660 i0 95.58 0.947643979057592 181 8 95 0 1 181 1831 1651 Tolivirales sp. strain MR233-17E/2125 polyprotein, tombus P33-like protein, and structural protein genes, complete cds blastn 181 291 1 Viruses   Orthornavirae Kitrinoviricota Tolucaviricetes Tolivirales     Tolivirales sp.
16048135 16048135 PRJNA768450_S_NODE_16033_length_185_cov_1.308824_g15984_i0 PRJNA768450 16033 185 1.308824 2.4213244 Benyvirus necrobetae 3427127 Viruses Viruses 324 3.03e-84   NTclustered gi|1883421658|gb|MT227165.1| 31721 g15984 i0 98.895 52.5189189189189 181 2 98 0 3 183 648 828 Beet necrotic yellow vein virus strain USA2020 segment RNA2, complete sequence blastn 9716 324 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Hepelivirales Benyviridae Benyvirus Benyvirus necrobetae
16048347 16048347 PRJNA768450_S_NODE_21293_length_166_cov_2.358974_g21244_i0 PRJNA768450 21293 166 2.358974 3.91589684 Tolivirales sp. 2809914 Viruses Viruses 279 5.86e-71   NTclustered gi|2647549457|gb|OR843652.1| 2809914 g21244 i0 97.546 2.02409638554217 163 4 98 0 1 163 1490 1652 Tolivirales sp. strain MR233-17E/2125 polyprotein, tombus P33-like protein, and structural protein genes, complete cds blastn 336 279 1 Viruses   Orthornavirae Kitrinoviricota Tolucaviricetes Tolivirales     Tolivirales sp.
17324094 17324094 PRJNA768450_S_NODE_21534_length_166_cov_1.128205_g21485_i0 PRJNA768450 21534 166 1.128205 1.8728203 Benyvirus necrobetae 3427127 Viruses Viruses 296 5.82e-76   NTclustered gi|1883421658|gb|MT227165.1| 31721 g21485 i0 98.795 27.1987951807229 166 2 100 0 1 166 2141 1976 Beet necrotic yellow vein virus strain USA2020 segment RNA2, complete sequence blastn 4515 296 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Hepelivirales Benyviridae Benyvirus Benyvirus necrobetae
17324423 17324423 PRJNA768450_S_NODE_6834_length_255_cov_2.548544_g6785_i0 PRJNA768450 6834 255 2.548544 6.4987872 Deltapartitivirus duobetae 3428206 Viruses Viruses 468 1.94e-127   NTclustered gi|2754350654|gb|PP987721.1| 912029 g6785 i0 100 6.94509803921569 253 0 99 0 3 255 1143 891 Beet cryptic virus 2 isolate Kz1-49C segment dsRNA2a, partial sequence blastn 1771 468 1 Viruses   Orthornavirae Pisuviricota Duplopiviricetes Durnavirales Partitiviridae Deltapartitivirus Deltapartitivirus duobetae
19872306 19872306 PRJNA768450_S_NODE_14796_length_191_cov_1.021127_g14747_i0 PRJNA768450 14796 191 1.021127 1.95035257 Benyvirus necrobetae 3427127 Viruses Viruses 350 5.2000000000000014e-92   NTclustered gi|1883421658|gb|MT227165.1| 31721 g14747 i0 100 17.8115183246073 189 0 99 0 3 191 3168 2980 Beet necrotic yellow vein virus strain USA2020 segment RNA2, complete sequence blastn 3402 350 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Hepelivirales Benyviridae Benyvirus Benyvirus necrobetae
21148730 21148730 PRJNA768450_S_NODE_8297_length_237_cov_2.319149_g8248_i0 PRJNA768450 8297 237 2.319149 5.49638313 Benyvirus necrobetae 3427127 Viruses Viruses 438 1.4e-118   NTclustered gi|2316779776|gb|OM830522.1| 31721 g8248 i0 100 99.8016877637131 237 0 100 0 1 237 103 339 Beet necrotic yellow vein virus isolate 36-Villalonso-ES coat protein gene, complete cds blastn 23653 438 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Hepelivirales Benyviridae Benyvirus Benyvirus necrobetae
23698529 23698529 PRJNA768450_S_NODE_16519_length_183_cov_1.365672_g16470_i0 PRJNA768450 16519 183 1.365672 2.49917976 Tolivirales sp. 2809914 Viruses Viruses 294 2.35e-75   NTclustered gi|2647549457|gb|OR843652.1| 2809914 g16470 i0 95.628 1.54644808743169 183 8 100 0 1 183 3671 3489 Tolivirales sp. strain MR233-17E/2125 polyprotein, tombus P33-like protein, and structural protein genes, complete cds blastn 283 294 1 Viruses   Orthornavirae Kitrinoviricota Tolucaviricetes Tolivirales     Tolivirales sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;