RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA767802" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA767802 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5848665 5848665 PRJNA767802_P_NODE_12185_length_200_cov_1.403974_g12112_i0 PRJNA767802 12185 200 1.403974 2.807948 Sandaracinus amylolyticus 927083 Bacteria Bacteria 189 1.2699999999999999e-43   NTclustered gi|816953346|gb|CP011125.1| 927083 g12112 i0 91.912 1.36 136 9 68 2 1 135 8066020 8065886 Sandaracinus amylolyticus strain DSM 53668, complete genome blastn 272 189 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae Sandaracinus Sandaracinus amylolyticus
17323540 17323540 PRJNA767802_P_NODE_4634_length_389_cov_2.661765_g4561_i0 PRJNA767802 4634 389 2.661765 10.35426585 Sandaracinus amylolyticus 927083 Bacteria Bacteria 514 3.94e-141   NTclustered gi|816953346|gb|CP011125.1| 927083 g4561 i0 90.746 12.6375321336761 389 30 99 6 4 389 8066574 8066189 Sandaracinus amylolyticus strain DSM 53668, complete genome blastn 4916 514 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae Sandaracinus Sandaracinus amylolyticus
23698148 23698148 PRJNA767802_P_NODE_3339_length_485_cov_2.018349_g3267_i0 PRJNA767802 3339 485 2.018349 9.78899265 Sandaracinus amylolyticus 927083 Bacteria Bacteria 342 2.51e-89   NTclustered gi|2183633570|gb|CP070225.1| 927083 g3267 i0 82.94 0.785567010309278 381 63 78 2 106 485 10172213 10171834 Sandaracinus strain MSr10575 (SBSa001) chromosome, complete sequence blastn 381 342 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae Sandaracinus Sandaracinus amylolyticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;