RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA767802" and tax_clade = "Cyanobacteriota/Melainabacteria group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 3 ✖

bioproject 1

  • PRJNA767802 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1206036 1206036 PRJNA767802_P_NODE_18021_length_163_cov_0.894737_g17948_i0 PRJNA767802 18021 163 0.894737 1.45842131 Pseudanabaenaceae 1890436 Bacteria Bacteria 302 1.22e-77   NTclustered gi|37988043|emb|AJ580008.1| 241710 g17948 i0 100 115.858895705521 163 0 100 0 1 163 2448 2286 Limnothrix sp. MR1 16S rRNA gene (partial), ITS1, tRNA-Ile gene, tRNA-Ala gene and 23S rRNA gene (partial), isolate MR1 blastn 18885 302 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Pseudanabaenales Pseudanabaenaceae Limnothrix Limnothrix sp. MR1
3296440 3296440 PRJNA767802_P_NODE_5503_length_344_cov_2.450847_g5430_i0 PRJNA767802 5503 344 2.450847 8.43091368 Nostocales cyanobacterium HT-58-2 1940762 Bacteria Bacteria 302 2.93e-77   NTclustered gi|1199827411|gb|CP019636.1| 1940762 g5430 i0 83.591 1.85755813953488 323 51 94 2 11 332 1695071 1695392 Nostocales cyanobacterium HT-58-2 chromosome, complete genome blastn 639 302 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Nostocales     Nostocales cyanobacterium HT-58-2
16509000 16509000 PRJNA767802_P_NODE_4013_length_429_cov_3.010526_g3940_i0 PRJNA767802 4013 429 3.010526 12.91515654 Planktothrix 54304 Bacteria Bacteria 763 0   NTclustered gi|2261196917|emb|LR882969.1| 1160 g3940 i0 99.76 176.375291375291 416 1 97 0 14 429 632296 632711 Planktothrix agardhii strain PCC 7811 genome assembly, chromosome: I blastn 75665 763 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Microcoleaceae Planktothrix Planktothrix agardhii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;