RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA766854" and tax_phylum = "Deinococcota"

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tax_superkingdom 1

tax_phylum 1

  • Deinococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA766854 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16508870 16508870 PRJNA766854_P_NODE_1713_length_318_cov_1.920415_g1588_i0 PRJNA766854 1713 318 1.920415 6.1069197 Deinococcus 1298 Bacteria Bacteria 119 2.9e-22   NTclustered gi|730601855|gb|CP010028.1| 57497 g1588 i0 100 70.3584905660377 64 0 20 0 255 318 70536 70599 Deinococcus swuensis strain DY59, complete genome blastn 22374 119 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiopugnans
17323287 17323287 PRJNA766854_P_NODE_2374_length_279_cov_3.428000_g2248_i0 PRJNA766854 2374 279 3.428 9.56412 Deinococcus actinosclerus 1768108 Bacteria Bacteria 438 1.6899999999999996e-118   NTclustered gi|972944657|gb|CP013910.1| 1768108 g2248 i0 94.982 481.598566308244 279 14 100 0 1 279 74588 74310 Deinococcus actinosclerus strain BM2 chromosome, complete genome blastn 134366 438 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus actinosclerus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;