RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA766854" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA766854 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6309996 6309996 PRJNA766854_P_NODE_1605_length_327_cov_6.879195_g1480_i0 PRJNA766854 1605 327 6.879195 22.49496765 root 1 Root_unresolved Root_unresolved 115 3.87e-21   NTclustered gi|939320171|emb|LN680460.1| 34034 g1480 i0 98.462 30.9266055045872 65 1 38 0 263 327 204 268 uncultured delta proteobacterium partial 16S rRNA gene, clone SBROB10_ 21 blastn 10113 115 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
24971581 24971581 PRJNA766854_P_NODE_18600_length_218_cov_32.333333_g18473_i0 PRJNA766854 18600 218 32.333333 70.48666594 uncultured delta proteobacterium 34034 Bacteria Bacteria 326 1.0299999999999999e-84   NTclustered gi|451917554|gb|KC451418.1| 34034 g18473 i0 95.567 81.9266055045872 203 9 93 0 16 218 1 203 Uncultured delta proteobacterium clone RLBp5365 16S ribosomal RNA gene, partial sequence blastn 17860 326 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;