RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA766854" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 5 ✖

bioproject 1

  • PRJNA766854 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7123684 7123684 PRJNA766854_P_NODE_18646_length_205_cov_4.142045_g18519_i0 PRJNA766854 18646 205 4.142045 8.49119225 uncultured Lunachloris 3049186 Plants Plants 287 4.51e-73   NTclustered gi|2515376804|gb|OR101661.1| 3049186 g18519 i0 92.929 98.8682926829268 198 13 97 1 4 201 1349 1153 Uncultured Lunachloris clone mgcl22_AM31 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 20268 287 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae       uncultured Lunachloris
7584002 7584002 PRJNA766854_P_NODE_1026_length_416_cov_5.764858_g909_i0 PRJNA766854 1026 416 5.764858 23.98180928 Pleurastrosarcina 1521739 Plants Plants 296 1.67e-75   NTclustered gi|1523740903|gb|MK228836.1| 163096 g909 i0 100 54.3942307692308 160 0 52 0 4 163 981 1140 Pleurastrosarcina brevispinosa strain SAG 34.83 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 22628 296 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Pleurastrosarcina Pleurastrosarcina brevispinosa
12685598 12685598 PRJNA766854_P_NODE_1690_length_320_cov_6.216495_g1565_i0 PRJNA766854 1690 320 6.216495 19.892784 Pleurastrosarcina 1521739 Plants Plants 296 1.26e-75   NTclustered gi|1523740903|gb|MK228836.1| 163096 g1565 i0 100 78.51875 160 0 79 0 4 163 981 1140 Pleurastrosarcina brevispinosa strain SAG 34.83 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 25126 296 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Pleurastrosarcina Pleurastrosarcina brevispinosa
16047568 16047568 PRJNA766854_P_NODE_2433_length_276_cov_3.056680_g2307_i0 PRJNA766854 2433 276 3.05668 8.4364368 Picochlorum sp. 2812594 Plants Plants 261 3.87e-65   NTclustered gi|2632235342|gb|OR922724.1| 2812594 g2307 i0 98.639 82.3731884057971 147 2 97 0 127 273 3463 3317 Picochlorum sp. strain AGSB0210 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 22735 261 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Picochlorum Picochlorum sp.
25432596 25432596 PRJNA766854_P_NODE_18840_length_157_cov_7.789062_g18713_i0 PRJNA766854 18840 157 7.789062 12.22882734 root 1 Root_unresolved Root_unresolved 274 2.54e-69   NTclustered gi|1714003650|gb|MN243923.1| 3079 g18713 i0 98.089 100.210191082803 157 3 100 0 1 157 722 878 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 15733 274 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;