RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA764222" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA764222 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17783358 17783358 PRJNA764222_S_NODE_17414_length_221_cov_2.413793_g17256_i0 PRJNA764222 17414 221 2.413793 5.33448253 Arcobacteraceae 2808963 Bacteria Bacteria 52.8 0.02   NTclustered gi|1133382777|gb|CP019070.1| 1850254 g17256 i0 100 0.253393665158371 28 0 13 0 187 214 1427460 1427433 Poseidonibacter parvus strain LPB0137 chromosome, complete genome blastn 56 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Poseidonibacter Poseidonibacter parvus
22422063 22422063 PRJNA764222_S_NODE_31018_length_166_cov_1.689076_g30860_i0 PRJNA764222 31018 166 1.689076 2.80386616 Arcobacter nitrofigilis 28199 Bacteria Bacteria 141 2.88e-29   NTclustered gi|296095720|gb|CP001999.1| 572480 g30860 i0 81.928 4.18072289156626 166 30 100 0 1 166 1012833 1012668 Arcobacter nitrofigilis DSM 7299 chromosome, complete genome blastn 694 141 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter nitrofigilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;