RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA764222" and tax_clade = "PVC group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA764222 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3296074 3296074 PRJNA764222_S_NODE_3403_length_341_cov_2.258503_g3245_i0 PRJNA764222 3403 341 2.258503 7.70149523 Neochlamydia sp. S13 1353976 Bacteria Bacteria 377 4.68e-100   NTclustered gi|1550189844|dbj|AP017977.1| 1353976 g3245 i0 86.782 103.75366568915 348 34 100 11 1 341 791403 791745 Neochlamydia sp. S13 DNA, complete genome blastn 35380 377 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Neochlamydia Neochlamydia sp. S13
5848430 5848430 PRJNA764222_S_NODE_9385_length_267_cov_2.622727_g9227_i0 PRJNA764222 9385 267 2.622727 7.00268109 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 337 6.019999999999998e-88   NTclustered gi|2874254096|emb|OY970179.1| 412056 g9227 i0 90.038 73.2134831460674 261 24 98 2 7 267 1727723 1727981 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05521.bin.c.1 genome assembly, chromosome: 1 blastn 19548 337 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
8398042 8398042 PRJNA764222_S_NODE_5347_length_305_cov_2.205426_g5189_i0 PRJNA764222 5347 305 2.205426 6.7265493 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 520 6.479999999999999e-143   NTclustered gi|2874253811|emb|OY969795.1| 464461 g5189 i0 97.386 157.462295081967 306 6 100 2 1 305 652829 653133 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 48026 520 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
16508602 16508602 PRJNA764222_S_NODE_11833_length_251_cov_1.250000_g11675_i0 PRJNA764222 11833 251 1.25 3.1375 Parachlamydia 83551 Bacteria Bacteria 279 9.58e-71   NTclustered gi|470491594|ref|NR_077046.1| 83552 g11675 i0 86.905 103.211155378486 252 29 99 3 1 250 272 23 Parachlamydia acanthamoebae strain UV-7 23S ribosomal RNA gene, complete sequence blastn 25906 279 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;