RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA763718" and tax_clade = "FCB group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • FCB group · 6 ✖

bioproject 1

  • PRJNA763718 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3757171 3757171 PRJNA763718_S_NODE_6683_length_169_cov_3.522727_g6475_i0 PRJNA763718 6683 169 3.522727 5.95340863 Flavobacterium 237 Bacteria Bacteria 313 5.859999999999999e-81   NTclustered gi|2243410383|gb|CP097434.1| 907046 g6475 i0 100 380.508875739645 169 0 100 0 1 169 24196 24028 Flavobacterium sp. B183 chromosome blastn 64306 313 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. B183
6309472 6309472 PRJNA763718_S_NODE_8625_length_151_cov_1.780702_g8417_i0 PRJNA763718 8625 151 1.780702 2.68886002 Flavobacterium 237 Bacteria Bacteria 274 2.42e-69   NTclustered gi|2548195263|gb|CP130042.1| 29533 g8417 i0 99.338 504.105960264901 151 1 100 0 1 151 1416527 1416677 Flavobacterium pectinovorum strain ZE23VCel01 chromosome, complete genome blastn 76120 274 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium pectinovorum
7122909 7122909 PRJNA763718_S_NODE_4066_length_218_cov_1.773481_g3858_i0 PRJNA763718 4066 218 1.773481 3.86618858 Flavobacterium eburneipallidum 3003263 Bacteria Bacteria 353 4.72e-93   NTclustered gi|2493280413|gb|CP114291.2| 3003263 g3858 i0 95.872 491.701834862385 218 9 100 0 1 218 1345520 1345737 Flavobacterium eburneipallidum strain IMCC36793 chromosome, complete genome blastn 107191 353 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium eburneipallidum
18595837 18595837 PRJNA763718_S_NODE_4515_length_206_cov_4.260355_g4307_i0 PRJNA763718 4515 206 4.260355 8.7763313 Flavobacterium sp. PS2 3384157 Bacteria Bacteria 353 4.41e-93   NTclustered gi|2872578279|gb|CP176426.1| 3384157 g4307 i0 97.573 537.854368932039 206 5 100 0 1 206 3706795 3707000 Flavobacterium sp. PS2 chromosome blastn 110798 353 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. PS2
18595850 18595850 PRJNA763718_S_NODE_6715_length_169_cov_1.537879_g6507_i0 PRJNA763718 6715 169 1.537879 2.59901551 Myroides sp. JBRI-B21084 3119977 Bacteria Bacteria 296 5.9e-76   NTclustered gi|2552842630|gb|CP120653.1| 3119977 g6507 i0 98.225 502.786982248521 169 3 100 0 1 169 374597 374429 Myroides sp. JBRI-B21084 chromosome, complete genome blastn 84971 296 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Myroides Myroides sp. JBRI-B21084
25432048 25432048 PRJNA763718_S_NODE_3840_length_225_cov_2.287234_g3632_i0 PRJNA763718 3840 225 2.287234 5.1462765 Flavobacterium 237 Bacteria Bacteria 405 1.33e-108   NTclustered gi|2482055250|gb|CP121111.1| 992289 g3632 i0 99.111 553.124444444444 225 2 100 0 1 225 42168 42392 Flavobacterium nitratireducens strain JCM 17678 chromosome, complete genome blastn 124453 405 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium nitratireducens

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;